bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggnogv4.proteins.all.fa 14,875,530 sequences; 5,112,597,290 total letters Query= Contig-1_CDS_annotation_glimmer3.pl_2_1 Length=91 Score E Sequences producing significant alignments: (Bits) Value 229533.XP_387677.1 34.7 1.3 > 229533.XP_387677.1 Length=265 Score = 34.7 bits (78), Expect = 1.3, Method: Compositional matrix adjust. Identities = 22/74 (30%), Positives = 38/74 (51%), Gaps = 4/74 (5%) Query 22 ARAAAMSFVQER----ILTYRQAEELVRYLTNIHDPKNMWDGIWRIVSLPAGVSKSDFAA 77 RA A+SF +ER +L R A++L I D + +++++P +SK + Sbjct 18 GRATAISFARERCLRLVLADRDADKLKDTQKTIIDMSKNQNQNIQVIAIPTDISKENDIE 77 Query 78 DLYDALCEEIGSVE 91 +LYD E+ G V+ Sbjct 78 NLYDTTIEKFGRVD 91 Lambda K H a alpha 0.318 0.130 0.372 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 126155698800