bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggnogv4.proteins.all.fa 14,875,530 sequences; 5,112,597,290 total letters Query= Contig-14_CDS_annotation_glimmer3.pl_2_4 Length=536 Score E Sequences producing significant alignments: (Bits) Value 469590.BSCG_01608 140 2e-33 > 469590.BSCG_01608 Length=497 Score = 140 bits (353), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 150/550 (27%), Positives = 229/550 (42%), Gaps = 79/550 (14%) Query 5 VVKPYCSCLHPVIIKNRYTGDPIYVECGECEVCLSNKAIQKELRCNIQLASSRCCFFVTL 64 V P+C CLHP I N YT + + V CG C+ C K + +C+++ +++ F+TL Sbjct 2 VQNPFCKCLHPKRIMNPYTKESMVVPCGHCQACTLAKNSRYAFQCDLESYTAKHTLFITL 61 Query 65 TYATVHIPVARFYKLNDSYHLCCVPRDHVYTYVTSQGYDREMSFCDEEFDCPTNLSDKAV 124 TYA IP A F + + C + D+E E P +L++ Sbjct 62 TYANRFIPRAMFVDSIERPYGCDL-------------IDKETG----EILGPADLTEDER 104 Query 125 TDLLAKTHLDRTVYPDGRSVVKYPNMVDLLPYLNYRDVQLFHKRINQQI-KKYTNEKIHT 183 T+LL K +L V PYL D+QLF KR+ + K+ +EK+ Sbjct 105 TNLLNKFYLFGDV-----------------PYLRKTDLQLFLKRLRYYVTKQKPSEKVRY 147 Query 184 YTVGEYGPKTFRPHFHILFFFDSERLAQIFGQLVDKAWRFGDSDTQRVWSSASSYVAGYL 243 + VGEYGP FRPH+H+L F S+ QI + + KAW FG D Q S+YVA Y+ Sbjct 148 FAVGEYGPVHFRPHYHLLLFLQSDEALQICSENISKAWTFGRVDCQVSKGQCSNYVASYV 207 Query 244 NSYLCLPEFYRYNRKIAPFGRFSQHFAERSFIEAFKPEENTEIFDKFVDGIYLSLGDKPT 303 NS +P+ ++ + + PF SQ + F++ + + + + F+ + L K Sbjct 208 NSSCTIPKVFKAS-SVCPFSVHSQKLGQ-GFLDCQREKIYSLTPENFIRSS-IVLNGKYK 264 Query 304 LCRPKRSLINRLYPILDRSSVSDVDSNVRTALFVSKIPQVLA-RYGFLDEV-TLFEQAKR 361 RS + YP R FV+K + A Y D LF AK Sbjct 265 EFDVWRSCYSFFYP--------------RCKGFVTKSSRERAYSYSIYDTARLLFPDAKT 310 Query 362 TFFVIKKYLQVDHSLDNAPEA-LRFIYNAC-------RLSLYL--------NFSELEGCS 405 TF + K+ + N E L +Y C LS Y +F+ E Sbjct 311 TFSLAKEIAIYIYYFHNPKETYLLDLYGYCSDQSKLYELSQYFYDSDVLLHSFNSGEFSR 370 Query 406 AVYRLFLAYRNLCDHWITVPSNHIAFYGQLRRAFRTIYAFYSYMDSKHL-----HDQLLK 460 V+R++ + H++ H + + R I FYS +D HL QL Sbjct 371 YVHRIYTELL-ISKHFLYFVCTHNTL-AERKSKQRLIEEFYSRLDYMHLTKFFEAQQLFY 428 Query 461 VRSWSQNNYLSTQVDFRYFYPLTDGELMCNSYREVLALSPFCRAAYAEVAADNRQRIKHK 520 ++ L T +YP + ++ + +P R ++V RIKHK Sbjct 429 ESDLIGDDDLCTDNWDNSYYPYFYNNVYTDT--NLFEKTPVYRLYSSDVKKLFNDRIKHK 486 Query 521 YLNDLNCVLI 530 LND N V Sbjct 487 KLNDANKVFF 496 Lambda K H a alpha 0.326 0.140 0.441 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 1164444220240