bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
49,011,213 sequences; 17,563,301,199 total letters
Query= Contig-5_CDS_annotation_glimmer3.pl_2_3
Length=811
Score E
Sequences producing significant alignments: (Bits) Value
gi|575094326|emb|CDL65712.1| unnamed protein product 451 6e-143
gi|547920049|ref|WP_022322420.1| capsid protein VP1 144 6e-33
gi|649569140|gb|KDS75238.1| capsid family protein 137 2e-31
gi|649555287|gb|KDS61824.1| capsid family protein 137 6e-31
gi|492501782|ref|WP_005867318.1| hypothetical protein 130 1e-28
gi|639237429|ref|WP_024568106.1| hypothetical protein 125 9e-27
gi|649557305|gb|KDS63784.1| capsid family protein 117 1e-25
gi|609718276|emb|CDN73650.1| conserved hypothetical protein 120 3e-25
gi|12085136|ref|NP_073538.1| major capsid protein 111 2e-22
gi|530695351|gb|AGT39907.1| major capsid protein 105 2e-20
>gi|575094326|emb|CDL65712.1| unnamed protein product [uncultured bacterium]
Length=758
Score = 451 bits (1161), Expect = 6e-143, Method: Compositional matrix adjust.
Identities = 244/446 (55%), Positives = 314/446 (70%), Gaps = 22/446 (5%)
Query 371 LTSDKPVDLTLGSS---PYYNSGSAN-KDKQIKISAYSFRAYEGIYNAYIRDNRNNPYYV 426
+T DK +D+ +GSS PYY GSAN DK IK+SAY FRAYE IYNAYIR+ RNNP+ +
Sbjct 330 ITFDK-LDVFIGSSGKYPYY--GSANMSDKAIKLSAYPFRAYEAIYNAYIRNTRNNPFVL 386
Query 427 NGQVQYNKWIPTYDGGADQ-NIYELRYANWEKDFLTTAVQSPQQGTAPLVGIttytetve 485
NG+ YN+WI T GG+D +LR+ANW+ D TTA+ +PQQG APLVG+TTY
Sbjct 387 NGKKTYNRWITTDAGGSDTLTPRDLRFANWQSDAYTTALTAPQQGVAPLVGLTTYEIRSV 446
Query 486 ttSDDGTPVTRELSRIALVDEDGKKYQVSFDSDSEGLKGVSYVELDNEVKLRQPRNLIDV 545
+D G VT A+VDE+G Y+V F+S+ E LKGV+Y L + ++L+
Sbjct 447 --NDAGHEVT--TVNTAIVDEEGNAYKVDFESNGEALKGVNYTPLKAGEAVNM-QSLVSP 501
Query 546 VTSGISINDLRNVNAYQKFLELNMRKGYSYRDIIEGRFNVKVRYDELLMPEFFGGFSRDI 605
VTSGISIND RNVNAYQ++LELN +G+SY++IIEGRF+V VRYD L MPE+ GG +RDI
Sbjct 502 VTSGISINDFRNVNAYQRYLELNQFRGFSYKEIIEGRFDVNVRYDALNMPEYLGGITRDI 561
Query 606 EMHSISQTVDQDLDGSQTYAKALGSQSGIAGVRGDSGRALECFCDEESIVMGILIVTPLP 665
++ I+QTV+ GS +Y +LGSQSG+A G++ ++ FCDEESIVMGI+ V P+P
Sbjct 562 VVNPITQTVETT--GSGSYVGSLGSQSGLATCFGNTDGSISVFCDEESIVMGIMYVMPMP 619
Query 666 VYTQLLPKHFTYRGLLDHYQPEFNHIGFQPILYKEVCPLQAYSDGPDTLSDVFGYNRPWY 725
VY LLPK TYR LD + PEF+HIG+QPI KE+ P+Q D D + VFGY RPWY
Sbjct 620 VYDSLLPKWLTYRERLDSFNPEFDHIGYQPIYAKELGPMQCVQDDIDP-NTVFGYQRPWY 678
Query 726 EYVQKYDQAHGLFRTNLSNFLMHRVFNQKPQLAQSFLVIDPAQVTDVFAVTKADDGTELA 785
EYV K D+AHGLF ++L NF+M R F+ P+L QSF V+ P V +VF+V TE++
Sbjct 679 EYVAKPDRAHGLFLSSLRNFIMFRSFDNVPELGQSFTVMQPGSVNNVFSV------TEVS 732
Query 786 DKIYGQIWFDCTAKLPISRVAIPRLD 811
DKI GQI FDCTA+LPISRV +PRL+
Sbjct 733 DKILGQIHFDCTAQLPISRVVVPRLE 758
Score = 139 bits (349), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 64/129 (50%), Positives = 90/129 (70%), Gaps = 4/129 (3%)
Query 5 AFDATLDVNNEIKVNNFDWSHANNLTTQIGRVTPVFCELVPAHGSVRINPRFGLQFMPMV 64
F+ D+ N++K N+FDWSH NN TT +GR+TPVF ELVP + S+RI P FGL+FMPM+
Sbjct 4 VFNKIGDIKNDVKRNSFDWSHDNNFTTDLGRITPVFTELVPPNSSIRIKPEFGLRFMPMM 63
Query 65 FPIQTRLRARMMFFKYPLRALWDGYRDFI-GNFREDLEEPYLDLNTV--TRLDAMAKTGS 121
FPIQT+++A + F+K PLR LW Y DFI + E+ + PY+ ++ + +A +G
Sbjct 64 FPIQTKMKAYLSFYKVPLRTLWADYMDFISSDNTEEFQPPYMSFDSTDYSEGGTLAPSG- 122
Query 122 LGDYLGLPT 130
LGDY G+PT
Sbjct 123 LGDYFGIPT 131
>gi|547920049|ref|WP_022322420.1| capsid protein VP1 [Parabacteroides merdae CAG:48]
gi|524592961|emb|CDD13573.1| capsid protein VP1 [Parabacteroides merdae CAG:48]
Length=553
Score = 144 bits (362), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 131/430 (30%), Positives = 192/430 (45%), Gaps = 53/430 (12%)
Query 399 KISAYSFRAYEGIYNAYIRD-NRNNPYYVNGQVQYNKWIPTYDGGADQ--NIYELRYANW 455
++SA FRAY+ IYN Y RD N P + + T GG DQ + LR W
Sbjct 159 QVSALPFRAYQLIYNEYYRDQNLTEP------IDFTLGSGTTVGG-DQLMALMSLRRRAW 211
Query 456 EKDFLTTAVQSPQQG---TAPLVGIttytetvettSDDGTPVTRELSRIALVDEDGKKYQ 512
EKD+ T+A+ Q+G T P+ G + V D R E+G Y
Sbjct 212 EKDYFTSALPWLQRGPEVTVPVQGAGGSMDVVYERQSDSQKWVDSSGREF---ENGHAYD 268
Query 513 VSF----DSDSEGLKGVS------YVELDNEVKLRQPRNLIDVVTSGISINDLRNVNAYQ 562
++ D +S + V+ ELD L+ ++V GI+INDLR NA Q
Sbjct 269 ITMARANDPNSALMVAVNGGTNNRAPELDPNGTLK-----VNVDEMGININDLRTSNALQ 323
Query 563 KFLELNMRKGYSYRDIIEGRFNVKVRYDELLMPEFFGGFSRDIEMHSISQTVDQDLDGSQ 622
++ E N R G Y + I F V+ L P+F GG I + + QT D Q
Sbjct 324 RWFERNARGGSRYIEQILSHFGVRSSDARLQRPQFLGGGRMPISVSEVLQTSSTDETSPQ 383
Query 623 TYAKALGSQSGIAGVRGDSGRALECFCDEESIVMGILIVTPLPVYTQLLPKHFTYRGLLD 682
G +GI + + +E ++GI+ +TP Y Q +P+ FT +D
Sbjct 384 ANMAGHGISAGI-------NNGFKHYFEEHGYIIGIMSITPRSGYQQGVPRDFTKFDNMD 436
Query 683 HYQPEFNHIGFQPILYKE--VCPLQAYSDGPDTLSDVFGYNRPWYEYVQKYDQAHGLFRT 740
Y PEF H+ Q I +E V AY++G FGY + EY +AHG FR
Sbjct 437 FYFPEFAHLSEQEIKNQELFVSEDAAYNNG------TFGYTPRYAEYKYHPSEAHGDFRG 490
Query 741 NLSNFLMHRVFNQKPQLAQSFLVIDPAQVTDVFAVTKADDGTELADKIYGQIWFDCTAKL 800
NLS + ++R+F KP L +F+ P+ VFA ++ +D DK + Q++ D A
Sbjct 491 NLSFWHLNRIFEDKPNLNTTFVECKPS--NRVFATSETED-----DKFWVQMYQDVKALR 543
Query 801 PISRVAIPRL 810
+ + P L
Sbjct 544 LMPKYGTPML 553
Score = 55.8 bits (133), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/124 (30%), Positives = 60/124 (48%), Gaps = 10/124 (8%)
Query 17 KVNNFDWSHANNLTTQIGRVTPVFCELVPAHGSVRINPRFGLQFMPMVFPIQTRLRARMM 76
+ N F+ S+ + LT +G + P+ C V + R+ ++ P+V P+ R+
Sbjct 14 RRNAFNLSYESKLTLNMGELVPIMCMPVVSGDKFRVKTESLVRLAPLVAPMMHRVNVFTH 73
Query 77 FFKYPLRALWDGYRDFI--GNFREDLEE-PYLDLNTVTRLDAMAKT-------GSLGDYL 126
+F P R +W+ + DFI G ED+ P + +N + L + A SL DYL
Sbjct 74 YFFVPNRLVWNEWEDFITKGVDGEDMPMFPKIQINQDSHLVSSASLIKEYFGDSSLWDYL 133
Query 127 GLPT 130
GLPT
Sbjct 134 GLPT 137
>gi|649569140|gb|KDS75238.1| capsid family protein, partial [Parabacteroides distasonis str.
3999B T(B) 6]
Length=390
Score = 137 bits (345), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 115/417 (28%), Positives = 183/417 (44%), Gaps = 37/417 (9%)
Query 399 KISAYSFRAYEGIYNAYIRDNRNNPYYVNGQVQYNKWIPTYDGGADQNIYELRYANWEKD 458
K+SA FRAY IYN Y RD + +++ Y + ++++L WEKD
Sbjct 6 KVSALPFRAYHLIYNEYYRDQN-----LTSELEITLDSGNYQLPVNSSLWQLHRRAWEKD 60
Query 459 FLTTAVQSPQQGTAPLVGIttytetvettSDD--GTPVTRELSRIALVDEDGKKYQVSFD 516
+ T+A+ Q+G V I E + +T R + + S
Sbjct 61 YFTSALPWVQRGPEVTVPINGGGEIPVEMKEGFAAQKITTFPDRKPISGSEVLYSAPSVL 120
Query 517 SDSE--GLKGVSYVELDNEVKLRQPRNLIDVVTSGISINDLRNVNAYQKFLELNMRKGYS 574
S + +KG + +E DN V ++ G++IND+R NA Q++ E N R G
Sbjct 121 SYGQIGSIKGQALIEPDNFV--------VNTDQMGVNINDIRTSNALQRWFERNARSGSR 172
Query 575 YRDIIEGRFNVKVRYDELLMPEFFGGFSRDIEMHSISQTVDQDLDGSQTYAKALGSQSGI 634
Y + I F V+ L P+F GG I + + QT D Q G +G+
Sbjct 173 YIEQILSHFGVRSSDARLQRPQFLGGGRTPISVSEVLQTSSTDSTSPQANMAGHGISAGV 232
Query 635 AGVRGDSGRALECFCDEESIVMGILIVTPLPVYTQLLPKHFTYRGLLDHYQPEFNHIGFQ 694
+ +E +MGI+ + P Y Q +PK F +D Y PEF H+G Q
Sbjct 233 -------NHGFTRYFEEHGYIMGIMSIRPRTGYQQGVPKDFRKFDNMDFYFPEFAHLGEQ 285
Query 695 PILYKEVCPLQAYSDGPDTLSD-VFGYNRPWYEYVQKYDQAHGLFRTNLSNFLMHRVFNQ 753
I +E+ Y + D ++ FGY + EY ++ HG FR N++ + ++R+F +
Sbjct 286 EIKNEEL-----YLNESDAANEGTFGYTPRYAEYKYSQNEVHGDFRGNMAFWHLNRIFKE 340
Query 754 KPQLAQSFLVIDPAQVTDVFAVTKADDGTELADKIYGQIWFDCTAKLPISRVAIPRL 810
KP L +F+ +P+ VFA + D DK + QI+ D A + + P L
Sbjct 341 KPNLNTTFVECNPS--NRVFATAETSD-----DKYWVQIYQDIKALRLMPKYGTPML 390
>gi|649555287|gb|KDS61824.1| capsid family protein [Parabacteroides distasonis str. 3999B
T(B) 4]
gi|649560568|gb|KDS66876.1| capsid family protein [Parabacteroides distasonis str. 3999B
T(B) 4]
gi|649561020|gb|KDS67307.1| capsid family protein [Parabacteroides distasonis str. 3999B
T(B) 4]
gi|649562724|gb|KDS68908.1| capsid family protein [Parabacteroides distasonis str. 3999B
T(B) 6]
Length=541
Score = 137 bits (346), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 115/417 (28%), Positives = 183/417 (44%), Gaps = 37/417 (9%)
Query 399 KISAYSFRAYEGIYNAYIRDNRNNPYYVNGQVQYNKWIPTYDGGADQNIYELRYANWEKD 458
K+SA FRAY IYN Y RD + +++ Y + ++++L WEKD
Sbjct 157 KVSALPFRAYHLIYNEYYRDQN-----LTSELEITLDSGNYQLPVNSSLWQLHRRAWEKD 211
Query 459 FLTTAVQSPQQGTAPLVGIttytetvettSDD--GTPVTRELSRIALVDEDGKKYQVSFD 516
+ T+A+ Q+G V I E + +T R + + S
Sbjct 212 YFTSALPWVQRGPEVTVPINGGGEIPVEMKEGFAAQKITTFPDRKPISGSEVLYSAPSVL 271
Query 517 SDSE--GLKGVSYVELDNEVKLRQPRNLIDVVTSGISINDLRNVNAYQKFLELNMRKGYS 574
S + +KG + +E DN V ++ G++IND+R NA Q++ E N R G
Sbjct 272 SYGQIGSIKGQALIEPDNFV--------VNTDQMGVNINDIRTSNALQRWFERNARSGSR 323
Query 575 YRDIIEGRFNVKVRYDELLMPEFFGGFSRDIEMHSISQTVDQDLDGSQTYAKALGSQSGI 634
Y + I F V+ L P+F GG I + + QT D Q G +G+
Sbjct 324 YIEQILSHFGVRSSDARLQRPQFLGGGRTPISVSEVLQTSSTDSTSPQANMAGHGISAGV 383
Query 635 AGVRGDSGRALECFCDEESIVMGILIVTPLPVYTQLLPKHFTYRGLLDHYQPEFNHIGFQ 694
+ +E +MGI+ + P Y Q +PK F +D Y PEF H+G Q
Sbjct 384 -------NHGFTRYFEEHGYIMGIMSIRPRTGYQQGVPKDFRKFDNMDFYFPEFAHLGEQ 436
Query 695 PILYKEVCPLQAYSDGPDTLSD-VFGYNRPWYEYVQKYDQAHGLFRTNLSNFLMHRVFNQ 753
I +E+ Y + D ++ FGY + EY ++ HG FR N++ + ++R+F +
Sbjct 437 EIKNEEL-----YLNESDAANEGTFGYTPRYAEYKYSQNEVHGDFRGNMAFWHLNRIFKE 491
Query 754 KPQLAQSFLVIDPAQVTDVFAVTKADDGTELADKIYGQIWFDCTAKLPISRVAIPRL 810
KP L +F+ +P+ VFA + D DK + QI+ D A + + P L
Sbjct 492 KPNLNTTFVECNPS--NRVFATAETSD-----DKYWVQIYQDIKALRLMPKYGTPML 541
Score = 60.1 bits (144), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/120 (31%), Positives = 58/120 (48%), Gaps = 6/120 (5%)
Query 17 KVNNFDWSHANNLTTQIGRVTPVFCELVPAHGSVRINPRFGLQFMPMVFPIQTRLRARMM 76
+ N F+ S+ N LT G + P+ C+ V R+N ++ P+V P+ R+
Sbjct 14 RRNVFNLSYENKLTVNAGELIPIMCKPVVPGDKFRVNTEMLVRLAPLVAPMMHRVDVFTH 73
Query 77 FFKYPLRALWDGYRDFIGNFREDLEEP----YLDLNTVTRLDAMAK--TGSLGDYLGLPT 130
+F P R +W+ + DFI + + P Y +TV +A GSL DYLGLP+
Sbjct 74 YFFVPNRLIWNKWEDFITKGVDGTDSPVFPTYSFPSTVDTANAHNSFGDGSLWDYLGLPS 133
>gi|492501782|ref|WP_005867318.1| hypothetical protein [Parabacteroides distasonis]
gi|409230408|gb|EKN23272.1| hypothetical protein HMPREF1059_03257 [Parabacteroides distasonis
CL09T03C24]
Length=538
Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 117/417 (28%), Positives = 181/417 (43%), Gaps = 41/417 (10%)
Query 399 KISAYSFRAYEGIYNAYIRD-NRNNPYYVNGQVQYNKWIPTYDGGADQNIYELRYANWEK 457
++SA FRAY+ IYN Y RD N P + N I + LR WEK
Sbjct 158 QVSALPFRAYQLIYNEYYRDQNLTKPI----EFSLNSGI-VLSADEVTRLLTLRRRTWEK 212
Query 458 DFLTTAVQSPQQG---TAPLVGIttytetvettSDDGTPVTRELSRIALVDEDGKKYQVS 514
D+ T+A+ Q+G T P+ G G + L A D +
Sbjct 213 DYFTSALPWVQRGPEVTVPIQG-------------SGGNLDVTLKNDAHADTYRMPGTSN 259
Query 515 FDSDSEGLKGVSYVELDNEVKLRQPRNL-IDVVTSGISINDLRNVNAYQKFLELNMRKGY 573
+ + L G + + + +P N ++V G+SINDLR NA Q++ E N R G
Sbjct 260 RPAGAMQLVGGALIAGGTDGAYLEPDNFQVNVDELGVSINDLRTSNALQRWFERNARSGS 319
Query 574 SYRDIIEGRFNVKVRYDELLMPEFFGGFSRDIEMHSISQTVDQDLDGSQTYAKALGSQSG 633
Y + I F V+ L P+F GG I + + QT D Q G +G
Sbjct 320 RYIEQILSHFGVRSSDARLQRPQFLGGGRTPISVSEVLQTSATDSTSPQANMAGHGISAG 379
Query 634 IAGVRGDSGRALECFCDEESIVMGILIVTPLPVYTQLLPKHFTYRGLLDHYQPEFNHIGF 693
+ + + +E ++GI+ + P Y Q +PK F +D Y PEF H+G
Sbjct 380 V-------NHGFKRYFEEHGYIIGIMSIRPRTGYQQGVPKDFRKFDNMDFYFPEFAHLGE 432
Query 694 QPILYKEVCPLQAYSDGPDTLSDVFGYNRPWYEYVQKYDQAHGLFRTNLSNFLMHRVFNQ 753
Q I +EV Q P + + FGY + EY ++ HG FR N++ + ++R+F++
Sbjct 433 QEIKNEEVYLQQT----PASNNGTFGYTPRYAEYKYSMNEVHGDFRGNMAFWHLNRIFSE 488
Query 754 KPQLAQSFLVIDPAQVTDVFAVTKADDGTELADKIYGQIWFDCTAKLPISRVAIPRL 810
P L +F+ +P+ VFA + D DK + Q++ D A + + P L
Sbjct 489 SPNLNTTFVECNPS--NRVFATAETSD-----DKYWIQLYQDVKALRLMPKYGTPML 538
Score = 63.2 bits (152), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/121 (31%), Positives = 55/121 (45%), Gaps = 7/121 (6%)
Query 17 KVNNFDWSHANNLTTQIGRVTPVFCELVPAHGSVRINPRFGLQFMPMVFPIQTRLRARMM 76
+ N F+ S+ N LT G + P+ C+ V R+N ++ P+V P+ R+
Sbjct 14 RRNVFNLSYENKLTANAGELVPIMCKPVVPGDKFRVNTEMLVRLAPLVAPMMHRVDVFTH 73
Query 77 FFKYPLRALWDGYRDFIGNFREDLEEPYL-------DLNTVTRLDAMAKTGSLGDYLGLP 129
+F P R LW+ + DFI + + P D T + GSL DYLGLP
Sbjct 74 YFFVPNRLLWNQWEDFITKGVDGTDTPVFPKIALRPDWVNPTSAAVLLDDGSLWDYLGLP 133
Query 130 T 130
T
Sbjct 134 T 134
>gi|639237429|ref|WP_024568106.1| hypothetical protein [Elizabethkingia anophelis]
Length=546
Score = 125 bits (313), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 119/427 (28%), Positives = 185/427 (43%), Gaps = 39/427 (9%)
Query 399 KISAYSFRAYEGIYNAYIRD-NRNNPYYV--NGQVQ------YNKWIPTYDGGADQNIYE 449
++S F AY+ I++ Y RD N + +V NG + N W P+ Q +++
Sbjct 138 RVSMLPFLAYQKIWDEYYRDENLIDSVFVDKNGDKRELFIDGINYWNPSLPYEFRQ-LFD 196
Query 450 LRYANWEKDFLTTAVQSPQQGTAPLVGIttytetvettSDDGTPVTRE----LSRIALVD 505
++ W D+ T+A+ Q+G A V + + G ++ LS
Sbjct 197 IKKRAWHHDYFTSALPFAQKGAA--VKMPLQMTADLFYNPGGNTFVKKPDGSLSHTGFRL 254
Query 506 EDGKKYQVSFDSDSEGLKGVSYVELDNEVKLRQPRNL-IDVVT-SGISINDLRNVNAYQK 563
EDG V D + S N V + NL +D+ T SG +INDLR Q+
Sbjct 255 EDG---SVPADGIGHLMVETSSTGNSNPVNIDNSSNLGVDLKTASGSTINDLRRAFKLQE 311
Query 564 FLELNMRKGYSYRDIIEGRFNVKVRYDELLMPEFFGGFSRDIEMHSISQTVDQDLDGSQT 623
+LE N R G Y + I F VK L PEF GG I + + Q D Q
Sbjct 312 WLEKNARAGSRYAESILSFFGVKTSDGRLQRPEFLGGNKTPILISEVLQQSSTDSTTPQG 371
Query 624 YAKALGSQSGIAGVRGDSGRALECFCDEESIVMGILIVTPLPVYTQLLPKHFTYRGLLDH 683
G G G F +E V+G++ V P Y+Q +P+HF+ D+
Sbjct 372 NMAGHGISVGKEG-------GFSKFFEEHGYVIGLMSVIPKTSYSQGIPRHFSKFDKFDY 424
Query 684 YQPEFNHIGFQPILYKEVCPLQAYSDGPDTLSDVFGYNRPWYEYVQKYDQAHGLFRTNLS 743
+ P+F HIG QP+ KE+ A + G VFGY + EY HG F+ L
Sbjct 425 FWPQFEHIGEQPVYNKEIF---AKNVGDYDSGGVFGYVPRYSEYKYSPSTIHGDFKDTLY 481
Query 744 NFLMHRVFNQK--PQLAQSFLVIDPAQVTDVFAVTKADDGTELADKIYGQIWFDCTAKLP 801
+ + R+F+ P+L + F+ ++ + ++ +FAV + +DK Y ++ TAK
Sbjct 482 FWHLGRIFDSSAPPKLNRDFIEVNKSGLSRIFAV------EDNSDKFYCHLYQKITAKRK 535
Query 802 ISRVAIP 808
+S P
Sbjct 536 MSYFGDP 542
Score = 57.0 bits (136), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 55/120 (46%), Gaps = 4/120 (3%)
Query 12 VNNEIKVNNFDWSHANNLTTQIGRVTPVFCELVPAHGSVRINPRFGLQFMPMVFPIQTRL 71
V+ K + F+ S+ + G + P+ C+ + + INP+ + PM+ P+ +
Sbjct 8 VSKAPKSSTFNMSYDRKFSMNFGDLVPIHCQEIVPGDKISINPQHMTRLAPMLAPVMHEV 67
Query 72 RARMMFFKYPLRALWDGYRDFIGNFREDLEEPYLDLNTVTRLDAMAKTGSLGDYLGLPTT 131
+ +F P R LW + FI + L+ L + V L SLGDYLGLP T
Sbjct 68 NVFIHYFFVPNRILWKNWEAFITGGQSGLDAHMLPV--VQNLP--VPKSSLGDYLGLPLT 123
>gi|649557305|gb|KDS63784.1| capsid family protein [Parabacteroides distasonis str. 3999B
T(B) 4]
gi|649559156|gb|KDS65543.1| capsid family protein [Parabacteroides distasonis str. 3999B
T(B) 6]
Length=245
Score = 117 bits (292), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 79/263 (30%), Positives = 123/263 (47%), Gaps = 20/263 (8%)
Query 549 GISINDLRNVNAYQKFLELNMRKGYSYRDIIEGRFNVKVRYDELLMPEFFGGFSRDIEMH 608
G++IND+R NA Q++ E N R G Y + I F V+ L P+F GG I +
Sbjct 2 GVNINDIRTSNALQRWFERNARSGSRYIEQILSHFGVRSSDARLQRPQFLGGGRTPISVS 61
Query 609 SISQTVDQDLDGSQTYAKALGSQSGIAGVRGDSGRALECFCDEESIVMGILIVTPLPVYT 668
+ QT D Q G +G+ + +E +MGI+ + P Y
Sbjct 62 EVLQTSSTDSTSPQANMAGHGISAGV-------NHGFTRYFEEHGYIMGIMSIRPRTGYQ 114
Query 669 QLLPKHFTYRGLLDHYQPEFNHIGFQPILYKEVCPLQAYSDGPDTLSD-VFGYNRPWYEY 727
Q +PK F +D Y PEF H+G Q I +E+ Y + D ++ FGY + EY
Sbjct 115 QGVPKDFRKFDNMDFYFPEFAHLGEQEIKNEEL-----YLNESDAANEGTFGYTPRYAEY 169
Query 728 VQKYDQAHGLFRTNLSNFLMHRVFNQKPQLAQSFLVIDPAQVTDVFAVTKADDGTELADK 787
++ HG FR N++ + ++R+F +KP L +F+ +P+ VFA + D DK
Sbjct 170 KYSQNEVHGDFRGNMAFWHLNRIFKEKPNLNTTFVECNPS--NRVFATAETSD-----DK 222
Query 788 IYGQIWFDCTAKLPISRVAIPRL 810
+ QI+ D A + + P L
Sbjct 223 YWVQIYQDIKALRLMPKYGTPML 245
>gi|609718276|emb|CDN73650.1| conserved hypothetical protein [Elizabethkingia anophelis]
Length=537
Score = 120 bits (301), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 119/426 (28%), Positives = 190/426 (45%), Gaps = 48/426 (11%)
Query 400 ISAYSFRAYEGIYNAY----------IRDNRNNPYYVNGQVQYNKWIPTYDGGADQNIYE 449
++ F AY+ I++ + RD+ NP + + +P Y + +++
Sbjct 139 VNLLPFLAYQKIWDEFYRDENLIQPLFRDSNGNPVKMFNDGINDHNLPPYSKFTE--LFK 196
Query 450 LRYANWEKDFLTTAVQSPQQGTAPLVGIttytetvettSDDGTPVTRELSRIALVDEDGK 509
+R W D+ T+A+ Q+G A + I P+T E+ + +
Sbjct 197 MRKRAWHHDYFTSALPFAQKGNAVKIPIF---------PQGNVPLTYEMGSQTFIKDMAG 247
Query 510 KYQVSFD--SDSEG-LKGVSYVELDNEVKLRQPRNL-IDVVTSGIS-INDLRNVNAYQKF 564
+ D SD G L+ VS + L +NL +++ + +S +NDLR Q++
Sbjct 248 NPAPNKDLRSDVNGNLQDVS----GQPLSLDPSKNLKLNMASENVSTVNDLRRAFKLQEW 303
Query 565 LELNMRKGYSYRDIIEGRFNVKVRYDELLMPEFFGGFSRDIEMHSISQTVDQDLDGSQTY 624
LE N R G Y + I F VK L PEF GG I IS+ + Q S T
Sbjct 304 LEKNARAGSRYAESILSFFGVKTSDGRLQRPEFLGGNKSPI---MISEVLQQSATDSTTP 360
Query 625 AKALGSQSGIAGVRGDSGRALECFCDEESIVMGILIVTPLPVYTQLLPKHFTYRGLLDHY 684
+ GI G+ D G F +E V+G++ V P Y+Q +P+HF+ D++
Sbjct 361 QGNMAGH-GI-GIGKDGG--FSRFFEEHGYVIGLMSVIPKTSYSQGIPRHFSKSDKFDYF 416
Query 685 QPEFNHIGFQPILYKEVCPLQAYSDGPDTLSDVFGYNRPWYEYVQKYDQAHGLFRTNLSN 744
P+F HIG QP+ KE+ D D+ + VFGY + EY HG F+ +L
Sbjct 417 WPQFEHIGEQPVYNKEI--FAKNIDAFDSEA-VFGYLPRYSEYKFSPSTVHGDFKDDLYF 473
Query 745 FLMHRVF--NQKPQLAQSFLVIDPAQVTDVFAVTKADDGTELADKIYGQIWFDCTAKLPI 802
+ + R+F ++ P L QSF+ D ++ +FAV DD DK Y ++ TAK +
Sbjct 474 WHLGRIFDTDKPPVLNQSFIECDKNALSRIFAV--EDD----TDKFYCHLYQKITAKRKM 527
Query 803 SRVAIP 808
S P
Sbjct 528 SYFGDP 533
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 63/136 (46%), Gaps = 11/136 (8%)
Query 17 KVNNFDWSHANNLTTQIGRVTPVFCELVPAHGSVRINPRFGLQFMPMVFPIQTRLRARMM 76
K + F+ S+ + G + P+ C+ V + INP+ + PM+ P+ + +
Sbjct 13 KSSTFNMSYDRKFSMNFGDLVPIHCQEVIPGDKISINPQHMTRLAPMIAPVMHEVNVFIH 72
Query 77 FFKYPLRALWDGYRDFIGNFREDLEEPYLDLNTVTRLDAM-AKTGSLGDYLGLPTTLFGK 135
+F P R +W + FI E LD + + R+ + GSL D+LGLP T G+
Sbjct 73 YFFVPNRIIWSNWEQFITG-----GESGLDQHLMPRVGNLPVSKGSLADHLGLPLTT-GR 126
Query 136 FGTTLSVATTGHIFGL 151
F +V G ++ L
Sbjct 127 F----AVGNAGVLYNL 138
>gi|12085136|ref|NP_073538.1| major capsid protein [Bdellovibrio phage phiMH2K]
gi|75089173|sp|Q9G059.1|F_BPPHM RecName: Full=Capsid protein VP1; Short=VP1 [Bdellovibrio phage
phiMH2K]
gi|12017984|gb|AAG45340.1|AF306496_1 Vp1 [Bdellovibrio phage phiMH2K]
Length=533
Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 114/432 (26%), Positives = 180/432 (42%), Gaps = 36/432 (8%)
Query 384 SPYYNSGSANKDKQIKISAYSFRAYEGIYNAYIRDNRNNPYYVNGQVQYNKWIPTYDGGA 443
S Y + G + ++I+A FRAY IYN + RD + G++ +P DG
Sbjct 125 SIYDHFGIPTQVANLEINALPFRAYNLIYNDWFRDQN-----LIGKIA----VPKGDGPD 175
Query 444 DQNIYELRYANWEKDFLTTAVQSPQQGTAPLVGIttytetvettSDDGTPVTR--ELSRI 501
+ Y+L A D+ T+A+ PQ+G A + I + P +
Sbjct 176 NHADYQLLKAAKPHDYFTSALPWPQKGMAVEMPIGNSAPITYVPNAGNGPYPHFNWVQTP 235
Query 502 ALVDEDGKKYQVSFDSDSEGLKGVSYVELDNEVKLRQPRNLIDVVT-SGISINDLRNVNA 560
+G QV+F G K +S D Q + D+ + + +IN LR
Sbjct 236 GGPGNNGALSQVTFG----GQKAISAAGNDPIGYDPQGTLIADLSSATAATINQLRQAMM 291
Query 561 YQKFLELNMRKGYSYRDIIEGRFNVKVRYDELLMPEFFGGFSRDIEMHSISQTVDQDLDG 620
Q LEL+ R G Y +I++ FNV L PE+ G + D++ + + QT D
Sbjct 292 MQSLLELDARGGTRYVEILKSHFNVISLDFRLQRPEYLSGGTIDLQQNPVPQTSSSTTDS 351
Query 621 SQTYAKALGSQSGIAGVRGDSGRALECFCDEESIVMGILIVTPLPVYTQLLPKHFTYRGL 680
Q A + S G S + F E V+G + Y Q L K ++ +
Sbjct 352 PQGNLAAFSTASEFGNKIGFS----KSFV-EHGYVLGFIRARGQVTYQQGLHKMWSRQTR 406
Query 681 LDHYQPEFNHIGFQPILYKEVCPLQAYSDGPDTLSDVFGYNRPWYEYVQKYDQAHGLFRT 740
D + P+F +G Q IL KE+ Y+ G T S++FGY + EY + + G FR+
Sbjct 407 WDFFWPKFQELGEQAILNKEI-----YAQGNATDSEIFGYQERYGEYRFRPSEIKGQFRS 461
Query 741 NLSNFL----MHRVFNQKPQLAQSFLVIDPAQVTDVFAVTKADDGTELADKIYGQIWFDC 796
N + L + F KP L ++F+ + + VT+ D + G WFD
Sbjct 462 NFAESLDVWHLAEYFTVKPSLNKTFIESN-TPIERSLVVTRPD-----YPDLIGDFWFDY 515
Query 797 TAKLPISRVAIP 808
T P+ +P
Sbjct 516 THVRPMVTYGVP 527
Score = 41.2 bits (95), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/114 (22%), Positives = 50/114 (44%), Gaps = 0/114 (0%)
Query 19 NNFDWSHANNLTTQIGRVTPVFCELVPAHGSVRINPRFGLQFMPMVFPIQTRLRARMMFF 78
+ F+ S T + +TP+F + + ++ +N + ++ V P+ R+ FF
Sbjct 23 SKFNRSFGTKDTFKFDDLTPIFIDEILPGDTINMNTKTFIRLATQVVPVMDRMMLDFYFF 82
Query 79 KYPLRALWDGYRDFIGNFREDLEEPYLDLNTVTRLDAMAKTGSLGDYLGLPTTL 132
P R +WD + F G + + T+T + S+ D+ G+PT +
Sbjct 83 FVPCRLVWDNWEKFNGAQDNPSDSTDYLIPTITAPAGGFENMSIYDHFGIPTQV 136
>gi|530695351|gb|AGT39907.1| major capsid protein [Marine gokushovirus]
Length=539
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 109/428 (25%), Positives = 172/428 (40%), Gaps = 35/428 (8%)
Query 389 SGSANKDKQIKISAYSFRAYEGIYNAYIRDNRNNPYYVNGQVQYNKWIPTYDGGADQNIY 448
+G + I ++ RAY I+N + RD +Q + + DG Y
Sbjct 137 AGQVDAGSSISHNSLFTRAYNLIWNEWFRDE---------NLQDSVVVDKGDGPDTYTDY 187
Query 449 ELRYANWEKDFLTTAVQSPQQGTAPLVGIttytetvettSDDGTPV-TRELSRIALVDED 507
L D+ T+A+ PQ+G A V + +D G P RE+S +
Sbjct 188 TLLRRGKRHDYFTSALPWPQKGDA--VTLPLGGSANVVYNDTGDPAYIREVSTGNVWTTP 245
Query 508 GKKYQVSFDSDSEGLKGVSYVELDNEVKLRQPRNLIDVVTSGISINDLRNVNAYQKFLEL 567
++ S ++ G V ++ + + +IN +R Q+ LE
Sbjct 246 SRE---SVSKEANGNMSVPTGSVNAQYDPNGSLVADLSTATAATINAIRQSFQIQRLLER 302
Query 568 NMRKGYSYRDIIEGRFNVKVRYDELLMPEFFGGFSRDIEMHSISQTVDQDLDGSQTYAKA 627
+ R G Y +I+ F V + PE+ GG S I ++ ++Q G+ T
Sbjct 303 DARGGTRYTEIVRSHFGVISPDARMQRPEYLGGGSAPIIVNPVAQQSASGASGTDTPLGT 362
Query 628 LGS-QSGIAGVRGDSGRALECFCDEESIVMGILIVTPLPVYTQLLPKHFTYRGLLDHYQP 686
LG+ +G+A SG E +V+G+ V Y Q L + F+ D + P
Sbjct 363 LGAVGTGLA-----SGHGFASSFTEHGVVVGLCSVRADLTYQQGLHRMFSRSTRYDFFFP 417
Query 687 EFNHIGFQPILYKEVCPLQAYSDGPDTLSDVFGYNRPWYEYVQKYDQAHGLFRTNLSNFL 746
F+H+G QPIL KE+ Y+ G T DVFGY W EY K Q GL R+ + L
Sbjct 418 VFSHLGEQPILNKEL-----YATGTSTDDDVFGYQEAWAEYRYKPSQVTGLMRSTAAGTL 472
Query 747 ----MHRVFNQKPQLAQSFLVIDPAQVTDVFAVTKADDGTELADKIYGQIWFDCTAKLPI 802
+ + F P L +F + D V V AV +G + + FD P+
Sbjct 473 DAWHLAQNFGSLPTLNSTF-IEDTPPVDRVVAVGSEANGQQFIFDAF----FDINMARPM 527
Query 803 SRVAIPRL 810
++P L
Sbjct 528 PMYSVPGL 535
Lambda K H a alpha
0.320 0.137 0.411 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 6454025655732