bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
49,011,213 sequences; 17,563,301,199 total letters
Query= Contig-4_CDS_annotation_glimmer3.pl_2_8
Length=104
Score E
Sequences producing significant alignments: (Bits) Value
gi|657946847|ref|XP_008386659.1| PREDICTED: ARF guanine-nucleoti... 40.0 0.14
gi|491226486|ref|WP_005084772.1| hypothetical protein 37.7 0.58
gi|491147011|ref|WP_005005410.1| leucine Rich Repeat family protein 34.7 5.1
gi|491203578|ref|WP_005061919.1| 60 kDa antigen domain protein 33.9 5.5
gi|460388333|ref|XP_004239822.1| PREDICTED: scarecrow-like prote... 35.0 5.6
gi|460388327|ref|XP_004239819.1| PREDICTED: scarecrow-like prote... 35.0 5.6
gi|491257350|ref|WP_005115513.1| hypothetical protein 34.7 5.9
gi|647302355|ref|WP_025745221.1| hypothetical protein 34.7 6.9
gi|647286794|ref|WP_025731841.1| hypothetical protein 34.7 6.9
gi|491233966|ref|WP_005092195.1| hypothetical protein 34.7 6.9
>gi|657946847|ref|XP_008386659.1| PREDICTED: ARF guanine-nucleotide exchange factor GNL2-like [Malus
domestica]
Length=1384
Score = 40.0 bits (92), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/60 (37%), Positives = 32/60 (53%), Gaps = 8/60 (13%)
Query 34 SIPRVSKLQNFKDEYFEELVWMLPEIAESLKKKNNTDASGAFPQFKGLLKYVNIRDYQLF 93
S P S L + + FE LV M+ IA+S+ K+N+T SG +P + IR+Y F
Sbjct 428 SFPVASPLTTLQIQAFEGLVIMIHNIADSIDKENDTSPSGPYP--------IEIREYTPF 479
>gi|491226486|ref|WP_005084772.1| hypothetical protein [Shigella flexneri]
gi|333017559|gb|EGK36871.1| 60 kDa antigen domain protein [Shigella flexneri K-304]
Length=245
Score = 37.7 bits (86), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 25/66 (38%), Positives = 38/66 (58%), Gaps = 6/66 (9%)
Query 32 LRSIPRVSKLQNFKDE--YFEELVWMLPEIAESLKKKN-NTDASGAFPQFKGLLKYVNIR 88
LRS+PR L + DE + MLPE+ +LK+ N +++ S A P+ L+Y+N+
Sbjct 71 LRSLPR---LPDNLDEINVSNNQLSMLPELPRALKELNASSNQSSALPELPVSLEYINVS 127
Query 89 DYQLFA 94
D LFA
Sbjct 128 DNHLFA 133
>gi|491147011|ref|WP_005005410.1| leucine Rich Repeat family protein [Shigella boydii]
gi|391285872|gb|EIQ44443.1| leucine Rich Repeat family protein [Shigella boydii 4444-74]
Length=181
Score = 34.7 bits (78), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 6/66 (9%)
Query 32 LRSIPRVSKLQNFKDE--YFEELVWMLPEIAESLKKKN-NTDASGAFPQFKGLLKYVNIR 88
LRS+PR L + DE + MLPE+ +LK+ N +++ A P+ L+Y+N+
Sbjct 71 LRSLPR---LPDNLDEINVSNNQLSMLPELPRALKELNASSNQLSALPELPVSLEYINVS 127
Query 89 DYQLFA 94
D LFA
Sbjct 128 DNHLFA 133
>gi|491203578|ref|WP_005061919.1| 60 kDa antigen domain protein [Shigella flexneri]
gi|333005963|gb|EGK25478.1| 60 kDa antigen domain protein [Shigella flexneri K-218]
Length=105
Score = 33.9 bits (76), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query 55 MLPEIAESLKKKN-NTDASGAFPQFKGLLKYVNIRDYQLFA 94
MLPE+ +LK+ N +++ A P+ L+Y+N+ D LFA
Sbjct 17 MLPELPRALKELNASSNQLSALPELPVSLEYINVSDNHLFA 57
>gi|460388333|ref|XP_004239822.1| PREDICTED: scarecrow-like protein 13-like isoform 4 [Solanum
lycopersicum]
Length=543
Score = 35.0 bits (79), Expect = 5.6, Method: Composition-based stats.
Identities = 22/82 (27%), Positives = 40/82 (49%), Gaps = 9/82 (11%)
Query 4 HLRLLEADRYKALALRYPNFISKFRPFILRSIPRVS-KLQNFKDEYFEELVWMLPEIAES 62
HL L+ +ALA+ +P ++L +P S N +D + + PEI
Sbjct 360 HLENLQMRHGEALAVNFP--------YVLHHMPDESVTTVNHRDRLLRLVKSLSPEIVTL 411
Query 63 LKKKNNTDASGAFPQFKGLLKY 84
+++++NT+ S P+F+ L Y
Sbjct 412 VEQESNTNTSAFLPRFRETLDY 433
>gi|460388327|ref|XP_004239819.1| PREDICTED: scarecrow-like protein 13-like isoform 1 [Solanum
lycopersicum]
gi|460388329|ref|XP_004239820.1| PREDICTED: scarecrow-like protein 13-like isoform 2 [Solanum
lycopersicum]
gi|460388331|ref|XP_004239821.1| PREDICTED: scarecrow-like protein 13-like isoform 3 [Solanum
lycopersicum]
Length=559
Score = 35.0 bits (79), Expect = 5.6, Method: Composition-based stats.
Identities = 22/82 (27%), Positives = 40/82 (49%), Gaps = 9/82 (11%)
Query 4 HLRLLEADRYKALALRYPNFISKFRPFILRSIPRVS-KLQNFKDEYFEELVWMLPEIAES 62
HL L+ +ALA+ +P ++L +P S N +D + + PEI
Sbjct 376 HLENLQMRHGEALAVNFP--------YVLHHMPDESVTTVNHRDRLLRLVKSLSPEIVTL 427
Query 63 LKKKNNTDASGAFPQFKGLLKY 84
+++++NT+ S P+F+ L Y
Sbjct 428 VEQESNTNTSAFLPRFRETLDY 449
>gi|491257350|ref|WP_005115513.1| hypothetical protein [Shigella flexneri]
gi|391252719|gb|EIQ11911.1| leucine Rich Repeat family protein [Shigella flexneri K-1770]
Length=243
Score = 34.7 bits (78), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 6/66 (9%)
Query 32 LRSIPRVSKLQNFKDE--YFEELVWMLPEIAESLKKKN-NTDASGAFPQFKGLLKYVNIR 88
LRS+PR L + DE + MLPE+ +LK+ N +++ A P+ L+Y+N+
Sbjct 71 LRSLPR---LPDNLDEINVSNNQLSMLPELPRALKELNASSNQLSALPELPVSLEYINVS 127
Query 89 DYQLFA 94
D LFA
Sbjct 128 DNHLFA 133
>gi|647302355|ref|WP_025745221.1| hypothetical protein, partial [Shigella flexneri]
Length=247
Score = 34.7 bits (78), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 6/66 (9%)
Query 32 LRSIPRVSKLQNFKDE--YFEELVWMLPEIAESLKKKN-NTDASGAFPQFKGLLKYVNIR 88
LRS+PR L + DE + MLPE+ +LK+ N +++ A P+ L+Y+N+
Sbjct 71 LRSLPR---LPDNLDEINVSNNQLSMLPELPRALKELNASSNQLSALPELPVSLEYINVS 127
Query 89 DYQLFA 94
D LFA
Sbjct 128 DNHLFA 133
>gi|647286794|ref|WP_025731841.1| hypothetical protein, partial [Shigella flexneri]
Length=257
Score = 34.7 bits (78), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 6/66 (9%)
Query 32 LRSIPRVSKLQNFKDE--YFEELVWMLPEIAESLKKKN-NTDASGAFPQFKGLLKYVNIR 88
LRS+PR L + DE + MLPE+ +LK+ N +++ A P+ L+Y+N+
Sbjct 71 LRSLPR---LPDNLDEINVSNNQLSMLPELPRALKELNASSNQLSALPELPVSLEYINVS 127
Query 89 DYQLFA 94
D LFA
Sbjct 128 DNHLFA 133
>gi|491233966|ref|WP_005092195.1| hypothetical protein [Shigella flexneri]
gi|332757081|gb|EGJ87422.1| 60 kDa antigen domain protein [Shigella flexneri 2747-71]
Length=259
Score = 34.7 bits (78), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 37/64 (58%), Gaps = 2/64 (3%)
Query 32 LRSIPRVSKLQNFKDEYFEELVWMLPEIAESLKKKN-NTDASGAFPQFKGLLKYVNIRDY 90
LRS+PR+ + + +L MLPE+ +LK+ N +++ A P+ L+Y+N+ D
Sbjct 71 LRSLPRLPDNLDEINVSNNQLS-MLPELPRALKELNASSNQLSALPELPVSLEYINVSDN 129
Query 91 QLFA 94
LFA
Sbjct 130 HLFA 133
Lambda K H a alpha
0.325 0.140 0.406 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 433549962150