bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
49,011,213 sequences; 17,563,301,199 total letters
Query= Contig-40_CDS_annotation_glimmer3.pl_2_1
Length=297
Score E
Sequences producing significant alignments: (Bits) Value
gi|575094430|emb|CDL65810.1| unnamed protein product 107 9e-24
gi|575094545|emb|CDL65905.1| unnamed protein product 66.6 3e-09
gi|575096057|emb|CDL66940.1| unnamed protein product 65.5 4e-09
gi|575094568|emb|CDL65929.1| unnamed protein product 60.5 3e-07
gi|393707865|ref|YP_004732987.1| structural protein VP2 58.9 5e-07
gi|470147451|ref|XP_004309317.1| PREDICTED: minor spike protein ... 56.6 1e-06
gi|9791177|ref|NP_063896.1| capsid protein VP2-related protein 56.2 2e-06
gi|17402852|ref|NP_510874.1| capsid protein VP2-related protein 56.2 2e-06
gi|9634952|ref|NP_054650.1| structural protein 56.2 2e-06
gi|47566144|ref|YP_022482.1| structural protein 56.2 2e-06
>gi|575094430|emb|CDL65810.1| unnamed protein product [uncultured bacterium]
Length=274
Score = 107 bits (267), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 48/77 (62%), Positives = 61/77 (79%), Gaps = 0/77 (0%)
Query 85 QRQSQFNQRSMLEQMGYNTLGAIAQGIYNHIENSAAMNFNSTEAMKNREWQEHMSNTAYQ 144
+ Q +N +SML MGYNTLGAI QGIYN I AAM +NS +AM+ +W+EHMSNT+YQ
Sbjct 85 KAQGNYNFKSMLTSMGYNTLGAITQGIYNSISQGAAMQYNSAQAMRQMKWEEHMSNTSYQ 144
Query 145 RAVADMKEAGLNPILAF 161
RA+ DM++AGLNPILA+
Sbjct 145 RAMEDMRKAGLNPILAY 161
>gi|575094545|emb|CDL65905.1| unnamed protein product [uncultured bacterium]
Length=325
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/41 (68%), Positives = 35/41 (85%), Gaps = 0/41 (0%)
Query 120 AMNFNSTEAMKNREWQEHMSNTAYQRAVADMKEAGLNPILA 160
AM F+S EA KNR+WQ +MSNTA+QR VAD+K AGLNP+L+
Sbjct 56 AMQFSSAEAAKNRDWQSYMSNTAHQREVADLKAAGLNPVLS 96
>gi|575096057|emb|CDL66940.1| unnamed protein product [uncultured bacterium]
Length=275
Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/52 (58%), Positives = 38/52 (73%), Gaps = 0/52 (0%)
Query 112 YNHIENSAAMNFNSTEAMKNREWQEHMSNTAYQRAVADMKEAGLNPILAFQN 163
+ +N+ AM FNS EA KNR+WQE MSNTA+QR V D+ AGLNP+L+ N
Sbjct 49 WQEAQNAKAMQFNSMEAAKNRKWQEMMSNTAHQREVKDLMAAGLNPVLSAMN 100
>gi|575094568|emb|CDL65929.1| unnamed protein product [uncultured bacterium]
Length=310
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/45 (62%), Positives = 34/45 (76%), Gaps = 0/45 (0%)
Query 116 ENSAAMNFNSTEAMKNREWQEHMSNTAYQRAVADMKEAGLNPILA 160
+N AM FN+ EA KNR WQE MSNTA+QR V D+ AGLNP+L+
Sbjct 71 QNRIAMQFNAAEAEKNRNWQEIMSNTAHQREVNDLMAAGLNPVLS 115
>gi|393707865|ref|YP_004732987.1| structural protein VP2 [Microviridae phi-CA82]
gi|311336637|gb|ADP89808.1| structural protein VP2 [Microviridae phi-CA82]
Length=234
Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 40/67 (60%), Gaps = 0/67 (0%)
Query 95 MLEQMGYNTLGAIAQGIYNHIENSAAMNFNSTEAMKNREWQEHMSNTAYQRAVADMKEAG 154
M E + T A Q +N + + FN+ EA KNR+WQE MSNTA QR + D ++AG
Sbjct 1 MSEYTQWMTAQADKQNKWNAEQTEKSNQFNAQEAQKNRDWQEQMSNTALQRKMQDAEKAG 60
Query 155 LNPILAF 161
LNPI A
Sbjct 61 LNPIFAL 67
>gi|470147451|ref|XP_004309317.1| PREDICTED: minor spike protein H-like, partial [Fragaria vesca
subsp. vesca]
Length=139
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/35 (66%), Positives = 30/35 (86%), Gaps = 0/35 (0%)
Query 127 EAMKNREWQEHMSNTAYQRAVADMKEAGLNPILAF 161
EA +NRE+QE +SN+AYQR VAD+ AGLNP+LA+
Sbjct 25 EAQRNREFQERLSNSAYQRQVADLSSAGLNPMLAY 59
>gi|9791177|ref|NP_063896.1| capsid protein VP2-related protein [Chlamydia pneumoniae phage
CPAR39]
gi|7190962|gb|AAF39722.1| capsid protein VP2-related protein [Chlamydia pneumoniae phage
CPAR39]
Length=186
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 41/65 (63%), Gaps = 6/65 (9%)
Query 100 GYNTLGAIAQGIYNHIENSAAMNFNSTEAMKNRE---WQEHMSNTAYQRAVADMKEAGLN 156
G + L IA G+ ++ A N+T RE +QE MSNTAYQRA+ DMK+AGLN
Sbjct 20 GLSFLPGIASGVLGYL---GAQKQNATAKQIAREQMAFQERMSNTAYQRAMEDMKKAGLN 76
Query 157 PILAF 161
P+LAF
Sbjct 77 PMLAF 81
>gi|17402852|ref|NP_510874.1| capsid protein VP2-related protein [Guinea pig Chlamydia phage]
Length=186
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 41/65 (63%), Gaps = 6/65 (9%)
Query 100 GYNTLGAIAQGIYNHIENSAAMNFNSTEAMKNRE---WQEHMSNTAYQRAVADMKEAGLN 156
G + L IA G+ ++ A N+T RE +QE MSNTAYQRA+ DMK+AGLN
Sbjct 20 GLSFLPGIASGVLGYL---GAQKQNATAKQIAREQMAFQERMSNTAYQRAMEDMKKAGLN 76
Query 157 PILAF 161
P+LAF
Sbjct 77 PMLAF 81
>gi|9634952|ref|NP_054650.1| structural protein [Chlamydia phage 2]
gi|7406592|emb|CAB85592.1| structural protein [Chlamydia phage 2]
Length=186
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 41/65 (63%), Gaps = 6/65 (9%)
Query 100 GYNTLGAIAQGIYNHIENSAAMNFNSTEAMKNRE---WQEHMSNTAYQRAVADMKEAGLN 156
G + L IA G+ ++ A N+T RE +QE MSNTAYQRA+ DMK+AGLN
Sbjct 20 GLSFLPGIASGVLGYL---GAQKQNATAKQIAREQMAFQERMSNTAYQRAMEDMKKAGLN 76
Query 157 PILAF 161
P+LAF
Sbjct 77 PMLAF 81
>gi|47566144|ref|YP_022482.1| structural protein [Chlamydia phage 3]
gi|47522479|emb|CAD79480.1| structural protein [Chlamydia phage 3]
Length=186
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 41/65 (63%), Gaps = 6/65 (9%)
Query 100 GYNTLGAIAQGIYNHIENSAAMNFNSTEAMKNRE---WQEHMSNTAYQRAVADMKEAGLN 156
G + L IA G+ ++ A N+T RE +QE MSNTAYQRA+ DMK+AGLN
Sbjct 20 GLSFLPGIASGVLGYL---GAQKQNATAKQIAREQMAFQERMSNTAYQRAMEDMKKAGLN 76
Query 157 PILAF 161
P+LAF
Sbjct 77 PMLAF 81
Lambda K H a alpha
0.313 0.126 0.365 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 1553797933200