bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 49,011,213 sequences; 17,563,301,199 total letters Query= Contig-36_CDS_annotation_glimmer3.pl_2_1 Length=79 Score E Sequences producing significant alignments: (Bits) Value gi|355746478|gb|EHH51092.1| hypothetical protein EGM_10418 35.0 4.3 >gi|355746478|gb|EHH51092.1| hypothetical protein EGM_10418 [Macaca fascicularis] Length=961 Score = 35.0 bits (79), Expect = 4.3, Method: Composition-based stats. Identities = 14/30 (47%), Positives = 23/30 (77%), Gaps = 0/30 (0%) Query 47 SEMAKEAQRMGILKPVEKAQESSETENKVD 76 ++++KE +RMG P +KAQES+ E++VD Sbjct 388 NQVSKEMKRMGFEDPKDKAQESANPEDEVD 417 Lambda K H a alpha 0.307 0.125 0.329 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 438269475921