bitscore colors: <40, 40-50 , 50-80, 80-200, >200

           BLASTP 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           49,011,213 sequences; 17,563,301,199 total letters





Query= Contig-35_CDS_annotation_glimmer3.pl_2_2

Length=50
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|655077981|ref|WP_028526111.1|  cytochrome C                        34.7    2.8


>gi|655077981|ref|WP_028526111.1| cytochrome C [Runella limosa]
Length=775

 Score = 34.7 bits (78),  Expect = 2.8, Method: Composition-based stats.
 Identities = 20/41 (49%), Positives = 27/41 (66%), Gaps = 1/41 (2%)

Query  8    LEEDVITKKYIFTKQERRLICEKTYDKDNEDLEKWNQKQLK  48
            LEE  +TK+ I TK  R ++C K  DK+ E LE + QK+LK
Sbjct  689  LEEKSVTKEKI-TKAFRLIVCRKPTDKEVEILESYYQKELK  728



Lambda      K        H        a         alpha
   0.318    0.136    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 443773169100