bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
49,011,213 sequences; 17,563,301,199 total letters
Query= Contig-32_CDS_annotation_glimmer3.pl_2_4
Length=497
Score E
Sequences producing significant alignments: (Bits) Value
gi|649557305|gb|KDS63784.1| capsid family protein 94.4 2e-18
gi|649569140|gb|KDS75238.1| capsid family protein 94.4 1e-17
gi|649555287|gb|KDS61824.1| capsid family protein 94.0 3e-17
gi|492501782|ref|WP_005867318.1| hypothetical protein 94.0 4e-17
gi|547312923|ref|WP_022044635.1| putative uncharacterized protein 87.4 1e-15
gi|547920049|ref|WP_022322420.1| capsid protein VP1 88.2 3e-15
gi|494610271|ref|WP_007368517.1| capsid protein 72.0 3e-10
gi|647452987|ref|WP_025792807.1| hypothetical protein 70.9 9e-10
gi|565841287|ref|WP_023924568.1| hypothetical protein 67.0 2e-08
gi|639237429|ref|WP_024568106.1| hypothetical protein 61.6 7e-07
>gi|649557305|gb|KDS63784.1| capsid family protein [Parabacteroides distasonis str. 3999B
T(B) 4]
gi|649559156|gb|KDS65543.1| capsid family protein [Parabacteroides distasonis str. 3999B
T(B) 6]
Length=245
Score = 94.4 bits (233), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 76/246 (31%), Positives = 111/246 (45%), Gaps = 19/246 (8%)
Query 253 LNRIAVSGGSYRDWLETVYASGQYIERCETPTFEGGTSQEIVFQEVVSNSATEN-EPLGT 311
R A SG Y + + + + R + P F GG I EV+ S+T++ P
Sbjct 18 FERNARSGSRYIEQILSHFGVRSSDARLQRPQFLGGGRTPISVSEVLQTSSTDSTSPQAN 77
Query 312 LAGRGINAGKQKGGKIKIRATEPGYMMCITSITPRIDYSQGNDFDSDWISLDDMHKPALD 371
+AG GI+AG G E GY+M I SI PR Y QG D D + P
Sbjct 78 MAGHGISAGVNHG--FTRYFEEHGYIMGIMSIRPRTGYQQGVPKDFRKFDNMDFYFPEFA 135
Query 372 GIGYQDSVNSGRAWWDDVYINNTGKAAKRTAGKTVAWIDYMTNVNRTYGNFAAGMSEAFM 431
+G Q+ N +++Y+N + A + T G T + +Y + N +G+F M AF
Sbjct 136 HLGEQEIKN------EELYLNESDAANEGTFGYTPRYAEYKYSQNEVHGDFRGNM--AFW 187
Query 432 VLNRNYEMKYEAGTNPKISDLTTYIDPVKYNYIFADTSIDAMNFWVQIKFDITARRLMSA 491
LNR ++ K P ++ TT+++ N +FA +WVQI DI A RLM
Sbjct 188 HLNRIFKEK------PNLN--TTFVECNPSNRVFATAETSDDKYWVQIYQDIKALRLMPK 239
Query 492 KQIPNL 497
P L
Sbjct 240 YGTPML 245
>gi|649569140|gb|KDS75238.1| capsid family protein, partial [Parabacteroides distasonis str.
3999B T(B) 6]
Length=390
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 76/246 (31%), Positives = 111/246 (45%), Gaps = 19/246 (8%)
Query 253 LNRIAVSGGSYRDWLETVYASGQYIERCETPTFEGGTSQEIVFQEVVSNSATEN-EPLGT 311
R A SG Y + + + + R + P F GG I EV+ S+T++ P
Sbjct 163 FERNARSGSRYIEQILSHFGVRSSDARLQRPQFLGGGRTPISVSEVLQTSSTDSTSPQAN 222
Query 312 LAGRGINAGKQKGGKIKIRATEPGYMMCITSITPRIDYSQGNDFDSDWISLDDMHKPALD 371
+AG GI+AG G E GY+M I SI PR Y QG D D + P
Sbjct 223 MAGHGISAGVNHG--FTRYFEEHGYIMGIMSIRPRTGYQQGVPKDFRKFDNMDFYFPEFA 280
Query 372 GIGYQDSVNSGRAWWDDVYINNTGKAAKRTAGKTVAWIDYMTNVNRTYGNFAAGMSEAFM 431
+G Q+ N +++Y+N + A + T G T + +Y + N +G+F M AF
Sbjct 281 HLGEQEIKN------EELYLNESDAANEGTFGYTPRYAEYKYSQNEVHGDFRGNM--AFW 332
Query 432 VLNRNYEMKYEAGTNPKISDLTTYIDPVKYNYIFADTSIDAMNFWVQIKFDITARRLMSA 491
LNR ++ K P ++ TT+++ N +FA +WVQI DI A RLM
Sbjct 333 HLNRIFKEK------PNLN--TTFVECNPSNRVFATAETSDDKYWVQIYQDIKALRLMPK 384
Query 492 KQIPNL 497
P L
Sbjct 385 YGTPML 390
>gi|649555287|gb|KDS61824.1| capsid family protein [Parabacteroides distasonis str. 3999B
T(B) 4]
gi|649560568|gb|KDS66876.1| capsid family protein [Parabacteroides distasonis str. 3999B
T(B) 4]
gi|649561020|gb|KDS67307.1| capsid family protein [Parabacteroides distasonis str. 3999B
T(B) 4]
gi|649562724|gb|KDS68908.1| capsid family protein [Parabacteroides distasonis str. 3999B
T(B) 6]
Length=541
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 76/246 (31%), Positives = 111/246 (45%), Gaps = 19/246 (8%)
Query 253 LNRIAVSGGSYRDWLETVYASGQYIERCETPTFEGGTSQEIVFQEVVSNSATEN-EPLGT 311
R A SG Y + + + + R + P F GG I EV+ S+T++ P
Sbjct 314 FERNARSGSRYIEQILSHFGVRSSDARLQRPQFLGGGRTPISVSEVLQTSSTDSTSPQAN 373
Query 312 LAGRGINAGKQKGGKIKIRATEPGYMMCITSITPRIDYSQGNDFDSDWISLDDMHKPALD 371
+AG GI+AG G E GY+M I SI PR Y QG D D + P
Sbjct 374 MAGHGISAGVNHG--FTRYFEEHGYIMGIMSIRPRTGYQQGVPKDFRKFDNMDFYFPEFA 431
Query 372 GIGYQDSVNSGRAWWDDVYINNTGKAAKRTAGKTVAWIDYMTNVNRTYGNFAAGMSEAFM 431
+G Q+ N +++Y+N + A + T G T + +Y + N +G+F M AF
Sbjct 432 HLGEQEIKN------EELYLNESDAANEGTFGYTPRYAEYKYSQNEVHGDFRGNM--AFW 483
Query 432 VLNRNYEMKYEAGTNPKISDLTTYIDPVKYNYIFADTSIDAMNFWVQIKFDITARRLMSA 491
LNR ++ K P ++ TT+++ N +FA +WVQI DI A RLM
Sbjct 484 HLNRIFKEK------PNLN--TTFVECNPSNRVFATAETSDDKYWVQIYQDIKALRLMPK 535
Query 492 KQIPNL 497
P L
Sbjct 536 YGTPML 541
>gi|492501782|ref|WP_005867318.1| hypothetical protein [Parabacteroides distasonis]
gi|409230408|gb|EKN23272.1| hypothetical protein HMPREF1059_03257 [Parabacteroides distasonis
CL09T03C24]
Length=538
Score = 94.0 bits (232), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 77/268 (29%), Positives = 120/268 (45%), Gaps = 19/268 (7%)
Query 231 VDVSDGTLSMDALNLQQKVYNMLNRIAVSGGSYRDWLETVYASGQYIERCETPTFEGGTS 290
V+V + +S++ L + R A SG Y + + + + R + P F GG
Sbjct 289 VNVDELGVSINDLRTSNALQRWFERNARSGSRYIEQILSHFGVRSSDARLQRPQFLGGGR 348
Query 291 QEIVFQEVVSNSATEN-EPLGTLAGRGINAGKQKGGKIKIRATEPGYMMCITSITPRIDY 349
I EV+ SAT++ P +AG GI+AG G K E GY++ I SI PR Y
Sbjct 349 TPISVSEVLQTSATDSTSPQANMAGHGISAGVNHG--FKRYFEEHGYIIGIMSIRPRTGY 406
Query 350 SQGNDFDSDWISLDDMHKPALDGIGYQDSVNSGRAWWDDVYINNTGKAAKRTAGKTVAWI 409
QG D D + P +G Q+ N ++VY+ T + T G T +
Sbjct 407 QQGVPKDFRKFDNMDFYFPEFAHLGEQEIKN------EEVYLQQTPASNNGTFGYTPRYA 460
Query 410 DYMTNVNRTYGNFAAGMSEAFMVLNRNYEMKYEAGTNPKISDLTTYIDPVKYNYIFADTS 469
+Y ++N +G+F M AF LNR + +P ++ TT+++ N +FA
Sbjct 461 EYKYSMNEVHGDFRGNM--AFWHLNRIFS------ESPNLN--TTFVECNPSNRVFATAE 510
Query 470 IDAMNFWVQIKFDITARRLMSAKQIPNL 497
+W+Q+ D+ A RLM P L
Sbjct 511 TSDDKYWIQLYQDVKALRLMPKYGTPML 538
>gi|547312923|ref|WP_022044635.1| putative uncharacterized protein [Alistipes finegoldii CAG:68]
gi|524208404|emb|CCZ76639.1| putative uncharacterized protein [Alistipes finegoldii CAG:68]
Length=338
Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 89/333 (27%), Positives = 138/333 (41%), Gaps = 41/333 (12%)
Query 199 GLLLKTYNSDLYQNWINTEWIDGANGINEITAVDVSDGT---LSMDALNLQQKVYNMLNR 255
GLL Y+ DL+ N I + A I + A+D++ T +++ L L+ K+ N ++R
Sbjct 11 GLLSVPYSPDLFGNIIK-QGSSPAVEIEVMNALDLNISTGFSVAVPELRLRTKIQNWMDR 69
Query 256 IAVSGGSYRDWLETVYASGQYIERCETPTFEGGTSQEIVFQEVVSNSATENEPLGTLAGR 315
+ VSGG D T++ + P F G V+Q ++ S G+ +G
Sbjct 70 LFVSGGRVGDVFRTLWGTKSSAIYVNKPDFLG------VWQASINPSNVRAMANGSASGE 123
Query 316 GINAGKQKG-----------GKIKIRATEPGYMMCITSITPRIDYSQGNDFDSDWISLDD 364
N G+ I A EPG M IT + P YSQG D IS D
Sbjct 124 DANLGQLAACVDRYCDFSGHSGIDYYAKEPGTFMLITMLVPEPAYSQGLHPDLASISFGD 183
Query 365 MHKPALDGIGYQDSVN------------SGRAWWDDVYINNTGKAA-----KRTAGKTVA 407
P L+GIG+Q +G + +TG + G+ VA
Sbjct 184 DFNPELNGIGFQLVPRHRFSMMPRGFNFTGLDQEASPWFGHTGTGVLVDPNMVSVGEEVA 243
Query 408 WIDYMTNVNRTYGNFAAGMSEAFMVLNRNYEMKYEAGTNPKISD---LTTYIDPVKYNYI 464
W T+ +R +G+FA + + VL R + + D TYI+P+ + Y+
Sbjct 244 WSWLRTDYSRLHGDFAQNGNYQYWVLTRRFTTYFPDDGTGFYQDGEYTGTYINPLDWQYV 303
Query 465 FADTSIDAMNFWVQIKFDITARRLMSAKQIPNL 497
F D ++ A NF FD+ +SA +P L
Sbjct 304 FVDQTLMAGNFAYYGTFDLNVTSSLSANYMPYL 336
>gi|547920049|ref|WP_022322420.1| capsid protein VP1 [Parabacteroides merdae CAG:48]
gi|524592961|emb|CDD13573.1| capsid protein VP1 [Parabacteroides merdae CAG:48]
Length=553
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 79/275 (29%), Positives = 121/275 (44%), Gaps = 23/275 (8%)
Query 226 NEITAVDVSDGTLSMDALNLQQKVYNMLNRIAVSGGSYRDWLETVYASGQYIERCETPTF 285
N V+V + ++++ L + R A G Y + + + + R + P F
Sbjct 299 NGTLKVNVDEMGININDLRTSNALQRWFERNARGGSRYIEQILSHFGVRSSDARLQRPQF 358
Query 286 EGGTSQEIVFQEVVSNSAT-ENEPLGTLAGRGINAGKQKGGKIKIRATEPGYMMCITSIT 344
GG I EV+ S+T E P +AG GI+AG G K E GY++ I SIT
Sbjct 359 LGGGRMPISVSEVLQTSSTDETSPQANMAGHGISAGINNG--FKHYFEEHGYIIGIMSIT 416
Query 345 PRIDYSQGNDFDSDWISLDDM--HKPALDGIGYQDSVNSGRAWWDDVYINNTGKAAKRTA 402
PR Y QG D+ D+M + P + Q+ N +D NN T
Sbjct 417 PRSGYQQG--VPRDFTKFDNMDFYFPEFAHLSEQEIKNQELFVSEDAAYNNG------TF 468
Query 403 GKTVAWIDYMTNVNRTYGNFAAGMSEAFMVLNRNYEMKYEAGTNPKISDLTTYIDPVKYN 462
G T + +Y + + +G+F +S F LNR +E K P ++ TT+++ N
Sbjct 469 GYTPRYAEYKYHPSEAHGDFRGNLS--FWHLNRIFEDK------PNLN--TTFVECKPSN 518
Query 463 YIFADTSIDAMNFWVQIKFDITARRLMSAKQIPNL 497
+FA + + FWVQ+ D+ A RLM P L
Sbjct 519 RVFATSETEDDKFWVQMYQDVKALRLMPKYGTPML 553
>gi|494610271|ref|WP_007368517.1| capsid protein [Prevotella multiformis]
gi|324988543|gb|EGC20506.1| putative capsid protein (F protein) [Prevotella multiformis DSM
16608]
Length=531
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 77/305 (25%), Positives = 126/305 (41%), Gaps = 32/305 (10%)
Query 222 ANGINEITAVDVSDGTLSMDALNLQQKVYNMLNRIAVSGG-SYRDWLETVYASGQYIERC 280
+NG++ + LS++ L + ML + G Y +E + R
Sbjct 230 SNGVSGASTFINGVSVLSVNDLRAAFALDKMLEATRRANGLDYSSQIEAHFGFRVPESRA 289
Query 281 ETPTFEGGTSQEIVFQEVVSNS-----ATENEPLGTLAGRGINAGKQKGGKIKIRATEPG 335
F GG +V EVV+ S A E+ LG L G+G+ G I E G
Sbjct 290 GDARFIGGFDNPVVISEVVNQSEFDRGADESPCLGDLGGKGV--GSLNSSSIDFDVKEHG 347
Query 336 YMMCITSITPRIDYSQGNDFD--SDWISLDDMHKPALDGIGYQDSVNSG--RAWWDDVYI 391
+MCI S+ P+ +Y G FD + + +D +P +GYQ V S + D+
Sbjct 348 IIMCIYSVVPQTEY-NGTYFDPFNRKLRREDFFQPEFADLGYQPVVTSDLISTYLDNPVP 406
Query 392 NNTGKAAKRTAGKTVAWID--------------YMTNVNRTYGNFAAGMSEAFMVLNR-N 436
+ K + AG ++ I+ Y T+ + +G F +G+S ++ R +
Sbjct 407 DGPEKQKRLAAGYPLSSIEANNRLLGWQVRYNEYKTSRDLVFGEFESGLSLSYWCSPRYD 466
Query 437 YEMKYEAG----TNPKISDLTTYIDPVKYNYIFADTSIDAMNFWVQIKFDITARRLMSAK 492
+ +AG N S Y++P N IF +++ A +F V FD+ A R MS
Sbjct 467 FGFDGKAGDKKLVNSPWSPAHFYVNPSILNTIFLVSAVKADHFLVNSFFDVKAVRPMSVS 526
Query 493 QIPNL 497
+ L
Sbjct 527 GLAGL 531
>gi|647452987|ref|WP_025792807.1| hypothetical protein [Prevotella histicola]
Length=584
Score = 70.9 bits (172), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 76/302 (25%), Positives = 127/302 (42%), Gaps = 47/302 (16%)
Query 233 VSDGTLSMDALNLQQKVYNMLNRIAVSGG-SYRDWLETVYASGQYIERCETPTFEGGTSQ 291
VS + S++ L + ML + G Y +E + R F GG
Sbjct 293 VSPSSFSVNDLRAAFALDKMLEATRRANGLDYASQIEAHFGFKVPESRANDARFLGGFDN 352
Query 292 EIVFQEVVS---NSATE--NEPLGTLAGRGINAGKQKGGKIKIRATEPGYMMCITSITPR 346
IV EVVS N+A++ + +G L G+GI G G I+ +TE G +MCI S+ P+
Sbjct 353 SIVVSEVVSTNGNAASDGSHASIGDLGGKGI--GSMSSGTIEFDSTEHGIIMCIYSVAPQ 410
Query 347 IDY--SQGNDFDSDWISLDDMHKPALDGIGYQD-----------SVNSGRAWWDDVYINN 393
+Y S + F+ ++ + ++P +GYQ +N +A + D+ +NN
Sbjct 411 SEYNASYLDPFNRK-LTREQFYQPEFADLGYQALIGSDLICSTLGMNEKQAGFSDIELNN 469
Query 394 TGKAAKRTAGKTVAWIDYMTNVNRTYGNFAAGMSEAFMVLNRNYEMKY------------ 441
G V + +Y T + +G+F +G S ++ R ++ Y
Sbjct 470 N------LLGYQVRYNEYKTARDLVFGDFESGKSLSYWCTPR-FDFGYGDTEKKIAPENK 522
Query 442 ------EAGTNPKISDLTTYIDPVKYNYIFADTSIDAMNFWVQIKFDITARRLMSAKQIP 495
+ G S YI+P N IF +++ A +F V D+ A R MS +
Sbjct 523 GGADYRKKGNRSHWSSRNFYINPNLVNPIFLTSAVQADHFIVNSFLDVKAVRPMSVTGLS 582
Query 496 NL 497
+L
Sbjct 583 SL 584
>gi|565841287|ref|WP_023924568.1| hypothetical protein [Prevotella nigrescens]
gi|564729907|gb|ETD29851.1| hypothetical protein HMPREF1173_00033 [Prevotella nigrescens
CC14M]
Length=656
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 72/283 (25%), Positives = 120/283 (42%), Gaps = 32/283 (11%)
Query 221 GANGINEITAVDVSDGTLSMDALNLQQKVYNMLNRI-AVSGGSYRDWLETVYASGQYIER 279
G+N I+ I+ D+ +M AL ML R A +G Y + + + R
Sbjct 384 GSNNISYISPNDIR----AMFALE------KMLERTRAANGLDYSNQIAAHFGFKVPESR 433
Query 280 CETPTFEGGTSQEIVFQEVVSNS-------ATENEPLGTLAGRGINAGKQKGGKIKIRAT 332
+F GG +I EVV+ S A+ +G + G+GI G G I
Sbjct 434 KNCASFIGGFDNQISISEVVTTSNGSVDGTASTGSVVGQVFGKGI--GAMNSGHISYDVK 491
Query 333 EPGYMMCITSITPRIDY--SQGNDFDSDWISLDDMHKPALDGIGYQDSVNSGRAWWDDVY 390
E G +MCI SI P++DY + + F+ + S +D +P + +G Q + S +
Sbjct 492 EHGLIMCIYSIAPQVDYDARELDPFNRKF-SREDYFQPEFENLGMQPVIQSDLCLCINSA 550
Query 391 INNTGKAAKRTAGKTVAWIDYMTNVNRTYGNFAAGMS-EAFMVLNRNYEMKYEAGTNPKI 449
+++ G + +++Y T + +G F +G S A+ NY ++ + P +
Sbjct 551 KSDSSDQHNNVLGYSARYLEYKTARDIIFGEFMSGGSLSAWATPKNNYTFEFGKLSLPDL 610
Query 450 SDLTTYIDPVKYNYIFA---DTSIDAMNFWVQIKFDITARRLM 489
+DP IFA + S+ F V FD+ A R M
Sbjct 611 -----LVDPKVLEPIFAVKYNGSMSTDQFLVNSYFDVKAIRPM 648
>gi|639237429|ref|WP_024568106.1| hypothetical protein [Elizabethkingia anophelis]
Length=546
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 62/245 (25%), Positives = 108/245 (44%), Gaps = 17/245 (7%)
Query 248 KVYNMLNRIAVSGGSYRDWLETVYASGQYIERCETPTFEGGTSQEIVFQEVVSNSATEN- 306
K+ L + A +G Y + + + + R + P F GG I+ EV+ S+T++
Sbjct 308 KLQEWLEKNARAGSRYAESILSFFGVKTSDGRLQRPEFLGGNKTPILISEVLQQSSTDST 367
Query 307 EPLGTLAGRGINAGKQKGGKIKIRATEPGYMMCITSITPRIDYSQGNDFDSDWISLDDMH 366
P G +AG GI+ GK+ GG K E GY++ + S+ P+ YSQG D
Sbjct 368 TPQGNMAGHGISVGKE-GGFSKF-FEEHGYVIGLMSVIPKTSYSQGIPRHFSKFDKFDYF 425
Query 367 KPALDGIGYQDSVNSGRAWWDDVYINNTGKA-AKRTAGKTVAWIDYMTNVNRTYGNFAAG 425
P + IG Q N +++ N G + G + +Y + + +G+F
Sbjct 426 WPQFEHIGEQPVYNK------EIFAKNVGDYDSGGVFGYVPRYSEYKYSPSTIHGDFKDT 479
Query 426 MSEAFMVLNRNYEMKYEAGTNPKISDLTTYIDPVKYNYIFADTSIDAMNFWVQIKFDITA 485
+ F L R +++ PK++ ++ + IFA ++ F+ + ITA
Sbjct 480 L--YFWHLGR----IFDSSAPPKLNRDFIEVNKSGLSRIFA-VEDNSDKFYCHLYQKITA 532
Query 486 RRLMS 490
+R MS
Sbjct 533 KRKMS 537
Lambda K H a alpha
0.315 0.132 0.394 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 3489190903935