bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
49,011,213 sequences; 17,563,301,199 total letters
Query= Contig-25_CDS_annotation_glimmer3.pl_2_4
Length=421
Score E
Sequences producing significant alignments: (Bits) Value
gi|575094546|emb|CDL65906.1| unnamed protein product 128 8e-30
gi|575096060|emb|CDL66943.1| unnamed protein product 127 1e-29
gi|575094494|emb|CDL65868.1| unnamed protein product 120 3e-27
gi|575094487|emb|CDL65854.1| unnamed protein product 118 1e-26
gi|575094436|emb|CDL65809.1| unnamed protein product 112 1e-24
gi|530695371|gb|AGT39925.1| replication initiator 110 5e-24
gi|575094418|emb|CDL65793.1| unnamed protein product 106 3e-22
gi|530695361|gb|AGT39916.1| replication initiator 100 1e-20
gi|575096096|emb|CDL66976.1| unnamed protein product 98.6 6e-20
gi|313766924|gb|ADR80651.1| putative replication initiation protein 92.4 7e-18
>gi|575094546|emb|CDL65906.1| unnamed protein product [uncultured bacterium]
Length=351
Score = 128 bits (321), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 102/279 (37%), Positives = 139/279 (50%), Gaps = 49/279 (18%)
Query 4 MACFHPNHVVVRDGQFQ---FLGSAAYLK----------SGDLFYDNPVSFHTLV-PCGR 49
M+C+HP VV+ L K S D+ DN + L+ PCG+
Sbjct 1 MSCYHPYLAVVKSNPITGDPILDPKTGKKCIKILHKISPSNDVLSDNLKQNNMLLLPCGQ 60
Query 50 CMGCRLDRSRVWADRMLLELKDNDYKALFVTLTYNDRSLPSAWHVGSNYFDGFYedvvpl 109
C+GCRLD SR WADR++LEL+ + A+FVTLTY++ ++P + DG
Sbjct 61 CIGCRLDYSRRWADRLMLELQYHT-AAIFVTLTYSELNVPKHHYQTP---DG-------- 108
Query 110 vldddeeWIaaaagapaTLSIRDTQLFMKrlrktfrdrrlrfflAGEYGPKTHRPHYHAI 169
+L RD QLF KRLRK + D ++RFFL+GEYGPKT RPHYHAI
Sbjct 109 -----------DVNTSYSLDKRDVQLFFKRLRKMYPDTKIRFFLSGEYGPKTFRPHYHAI 157
Query 170 IYGLTLS-DFKDCRIKDFNKLGQPRYISKSFERIWGN-----------GYCVLAPVNWNT 217
I+G+ + D R++ + + Y S S ER W G + V+W+T
Sbjct 158 IFGVDFAHDRYVWRVRRADNMFVNYYRSPSLERAWSVYNNDVGDYVPIGNVEFSDVSWHT 217
Query 218 CAYVSRYTMKKVYKSENSHAYASGQLPPFCTMSRRPGIG 256
CAYV+RY KK+ + PPF MSR+PGI
Sbjct 218 CAYVARYVTKKLTGNLAQFYTTFNLTPPFSLMSRKPGIA 256
>gi|575096060|emb|CDL66943.1| unnamed protein product [uncultured bacterium]
Length=339
Score = 127 bits (320), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 100/291 (34%), Positives = 141/291 (48%), Gaps = 44/291 (15%)
Query 2 IFMACFHP------NHVVVRDGQFQFLGSAAYLKSGDLFYDNPVSFHTLVPCGRCMGCRL 55
+ ++C+HP V +G+ + + + + Y PV +PCG+C+GCR+
Sbjct 9 VGLSCYHPILAYKSKTVNPENGKCKII----FQTPTSMAYWEPVQ----LPCGQCIGCRI 60
Query 56 DRSRVWADRMLLELKDNDYKALFVTLTYNDRSLPSAWHVGSNYFDGFYedvvplvlddde 115
D SR WA+R +LEL+D+D A F T TY++ +P +++ +
Sbjct 61 DYSRQWANRCMLELQDHD-SAFFCTFTYDNDHVPISYYADKETGEA-------------- 105
Query 116 eWIaaaagapaTLSIRDTQLFMKrlrktfrdrrlrfflAGEYGPKTHRPHYHAIIYGLTL 175
TL RD QL MKR+RK F D +RFF AGEYG +T RPHYHAIIYGL L
Sbjct 106 -------KPSLTLRKRDFQLLMKRIRKHFSDDHIRFFAAGEYGGQTLRPHYHAIIYGLHL 158
Query 176 SDFKDCRIKDFNKLGQPRYISKSFERIWGN------GYCVLAPVNWNTCAYVSRYTMKKV 229
+D + + Y S S ++ W + G+ V+ V W +CAY +RY +KK
Sbjct 159 NDLVPYKTVKEGGVLYTYYNSPSLQKCWLDSDGKPIGFVVVGAVTWESCAYTARYVLKK- 217
Query 230 YKSENSHAYASGQL-PPFCTMSRRPGIGLLHADDLLKKGDKTFIRDIDLNG 279
K E S Y L P F MSR+PGI + D FI L G
Sbjct 218 QKGEASTVYQEFNLEPEFTLMSRKPGIARNYYDTHPDLFQSDFINISTLKG 268
>gi|575094494|emb|CDL65868.1| unnamed protein product [uncultured bacterium]
Length=348
Score = 120 bits (301), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 85/265 (32%), Positives = 132/265 (50%), Gaps = 34/265 (13%)
Query 42 HTLVPCGRCMGCRLDRSRVWADRMLLELKDNDYKALFVTLTYNDRSLPSAWHVGSNYFDG 101
+ ++PCG+C+GCRL SR WADR +LE + + + F+TLTY+D +LP + + + +
Sbjct 59 YIIIPCGKCVGCRLAYSRQWADRCMLESSYHTH-SYFLTLTYDDDNLPLSESINQDTGEI 117
Query 102 FYedvvplvldddeeWIaaaagapaTLSIRDTQLFMKr-----lrktfrdrrlrfflAGE 156
Y TL +D Q F+KR + +++F AGE
Sbjct 118 NYNA---------------------TLVKKDIQDFIKRLRRFCEYNIDDNLHIKYFCAGE 156
Query 157 YGPKTHRPHYHAIIYGLTLSDFKDCRIKDFNKLGQPRYISKSFERIWGNGYCVLAPVNWN 216
YG +T RPHYH I+YG ++D K + + G Y S + +++W G+ V+ V W+
Sbjct 157 YGSQTFRPHYHMILYGFPINDLK---LYKMSLDGYNYYNSATIDKLWKKGFVVIGEVTWD 213
Query 217 TCAYVSRYTMKKVYKSENSHAYASGQLPPFCTMSRRPGIGLLHADDLLKKGDKTFIRD-I 275
TCAY +RY +KK Y S LP F MS +P I + +D DK F D I
Sbjct 214 TCAYTARYILKKQYGSGAQIYKDYNILPEFTCMSTKPAIAREYYED---NKDKIFDSDYI 270
Query 276 DLNGKECTREVYLGRAFIRSAAREH 300
L KE + ++ + F + +E+
Sbjct 271 FLGTKEKSIQMKPPKYFEKLLEKEN 295
>gi|575094487|emb|CDL65854.1| unnamed protein product [uncultured bacterium]
Length=332
Score = 118 bits (296), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 80/220 (36%), Positives = 110/220 (50%), Gaps = 26/220 (12%)
Query 44 LVPCGRCMGCRLDRSRVWADRMLLELKDNDYKALFVTLTYNDRSLPSAWHVGSNYFDGFY 103
++PC +C+GCRL +SR WA+R+++E + ++ F+TLTYND LP ++ V
Sbjct 50 MLPCRQCVGCRLSKSREWANRVVME-QLYHVESWFLTLTYNDEHLPRSFPVDEA------ 102
Query 104 edvvplvldddeeWIaaaagapaTLSIRDTQLFMKrlrktfrdrrlrfflAGEYGPKTHR 163
TL D Q F+KRLRK + F AGEYG R
Sbjct 103 --------------TGEILSVHGTLVKEDLQKFLKRLRKNSGQKLRFFA-AGEYGSLNMR 147
Query 164 PHYHAIIYGLTLSDFKDCRIKDFNKLGQPRYISKSFERIWGNGYCVLAPVNWNTCAYVSR 223
PHYH +I+GL L D + R + LG Y S E+ W G+ +L V W + AYV+R
Sbjct 148 PHYHLLIFGLHLEDLQLLRK---SPLGDEYYTSSLLEKCWPFGFHILGRVTWQSAAYVAR 204
Query 224 YTMKKVYKSENSHAYASGQL-PPFCTMSRRPGIGLLHADD 262
YTMKK K + Y L P F MS RPG+ + +D
Sbjct 205 YTMKKASKGYDKDLYKKAALQPEFQVMSNRPGLARQYYED 244
>gi|575094436|emb|CDL65809.1| unnamed protein product [uncultured bacterium]
Length=340
Score = 112 bits (281), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 83/243 (34%), Positives = 116/243 (48%), Gaps = 24/243 (10%)
Query 44 LVPCGRCMGCRLDRSRVWADRMLLELKDNDYKALFVTLTYNDRSLPSAWHVGSNYFDGFY 103
L+PCG+C+GCR+ + WA R+ LE + +A FVTLTY D ++P +G
Sbjct 48 LIPCGKCIGCRIRAKQDWATRLELEARAYKGRAWFVTLTYRDDTIPLLIRNTGELIEGGV 107
Query 104 edvvplvldddeeWIaaaagapaTLSIRDTQLFMKrlrktfrdrrlrffl-----AGEYG 158
++ TL++ D F KRLRK AGEYG
Sbjct 108 SMWSRGADVPEQI---------NTLNMDDVTKFWKRLRKYQTTEPDMGKELRYFYAGEYG 158
Query 159 PKTHRPHYHAIIYGLTLSDFKDCRIKDFNKLGQPRYISKSFERIWGNGYCVLAPVNWNTC 218
+T RPHYHAII+GL + D K ++ N+ Y S E+IWG G +A T
Sbjct 159 EQTGRPHYHAIIFGLEIPDLK--KVPGRNQY----YKSAILEKIWGKGNVTIAYSEPGTY 212
Query 219 AYVSRYTMKKVYKSENSHAYASGQLPPFCTMSRRPGIGLLHADDLLKKGDKTFIRD-IDL 277
YV+ Y KK+Y ++ G P+ MSR+PGIG+ + L DK + +D I L
Sbjct 213 NYVAGYVTKKMYGNDTKEYQNLGLTAPYACMSRKPGIGMPWLEQNL---DKLWEQDYIQL 269
Query 278 NGK 280
GK
Sbjct 270 AGK 272
>gi|530695371|gb|AGT39925.1| replication initiator [Marine gokushovirus]
Length=316
Score = 110 bits (275), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 86/261 (33%), Positives = 130/261 (50%), Gaps = 55/261 (21%)
Query 4 MACFHP-NHVVVRDGQFQFLGSAAYLKSGDLFYDNPVSFHTLVPCGRCMGCRLDRSRVWA 62
MAC+ P + G F AYL D P+ +PC +C+GCRL++SR WA
Sbjct 18 MACYFPIDAFRSHAGGVTFSRKGAYL-------DLPIQ----IPCNQCIGCRLEKSRQWA 66
Query 63 DRMLLELKDNDYKALFVTLTYNDRSLPSAWHVGSNYFDGFYedvvplvldddeeWIaaaa 122
R E K + F+TLTYN LP
Sbjct 67 LRCTHEAKLYKNNS-FITLTYNSDHLP------------------------------LTN 95
Query 123 gapaTLSIRDTQLFMKrlrktfrdrrlrfflAGEYGPKTHRPHYHAIIYGLTLSDFKDCR 182
+ TL++R QLF+KRLRK + ++ +RF+ GEYG HRPHYHA+++ DF+D +
Sbjct 96 NSLPTLNLRHFQLFLKRLRKKYSNKTIRFYHCGEYGDMNHRPHYHALLFN---HDFEDKK 152
Query 183 IKDFNKLGQPRYISKSFERIWGN-------GYCVLAPVNWNTCAYVSRYTMKKVYKSENS 235
+ +K Q Y S+ + +W + G+ + + +++ AYV+RY +KK+ +N+
Sbjct 153 LWKIHK-DQNYYTSEVLDGLWTDPKTKSNMGFSTIGDLTFDSAAYVARYCLKKI-TGKNA 210
Query 236 HAYASGQLPPFCTMSRRPGIG 256
Y G++P + TMSRRPGIG
Sbjct 211 EDYYQGRVPEYATMSRRPGIG 231
>gi|575094418|emb|CDL65793.1| unnamed protein product [uncultured bacterium]
Length=367
Score = 106 bits (264), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 85/265 (32%), Positives = 127/265 (48%), Gaps = 35/265 (13%)
Query 6 CFHPNHVVVRDGQFQFLGS---------AAYLKSGDLFYDNPVSFHTLVPCGRCMGCRLD 56
CFHP VV R + ++G +A K ++ D V L PCG+C+ CR+
Sbjct 2 CFHPG-VVDRTNKNTYIGGLEKWIERIGSAKCKK-NILEDKWV----LTPCGQCLACRIQ 55
Query 57 RSRVWADRMLLELKDNDYK-ALFVTLTYNDRSLPSAWHVGSNYFDGFYedvvplvlddde 115
+ WA R EL+ N +K ++F+TLTY++ +P + G +
Sbjct 56 YAANWAAR--CELETNYHKQSIFLTLTYDEEHVPVLNKETGEIYRGV---------RNPA 104
Query 116 eWIaaaagapaTLSIRDTQLFMKrlrktfrdrrlrffl----AGEYGPKTHRPHYHAIIY 171
E++A T+ D Q F+KRLRK L + +GEYG KT RPHYH I+Y
Sbjct 105 EYVAGVTLERMTVYKPDVQKFIKRLRKAAEKEGLTDHIMYYLSGEYGDKTGRPHYHLIVY 164
Query 172 GLTLSDFKDCRIKDFNKLGQPRYISKSFERIWGNGYCVLAPVNWNTCAYVSRYTMKKVYK 231
GL + D + ++ G R+ S+ + IWG G + V + +C YV+RY +KK
Sbjct 165 GLEVPDAEHI----GSRRGYDRFTSEWLKGIWGMGLIEIGSVTYESCQYVARYVIKKRKG 220
Query 232 SENSHAYASGQLPPFCTMSRRPGIG 256
E +G +P F MS +P IG
Sbjct 221 KEAKEYKDAGIMPEFVQMSLKPAIG 245
>gi|530695361|gb|AGT39916.1| replication initiator [Marine gokushovirus]
Length=289
Score = 100 bits (248), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 82/265 (31%), Positives = 120/265 (45%), Gaps = 63/265 (24%)
Query 4 MACFHPNHVVVRDGQFQFLGSAAYLKSGDLFYDNPVSFHT--LVPCGRCMGCRLDRSRVW 61
M C+HP AY G + +D P +F +PCG+C+GCRLD SR W
Sbjct 1 MPCYHP--------------LVAYKCDGKVVFDKPFAFARGFNLPCGQCIGCRLDYSRQW 46
Query 62 ADRMLLELKDNDYKALFVTLTYNDRSLPSAWHVGSNYFDGFYedvvplvldddeeWIaaa 121
A R + E + ++ F+TLT+++ +
Sbjct 47 AIRCVHEAQTHE-DNCFITLTFDNEHIAK------------------------------- 74
Query 122 agapaTLSIRDTQLFMKrlrktfrdrrlrfflAGEYGPKTHRPHYHAIIYGLTLSDFKDC 181
P +L + Q FMKRLRK + + F GEYG + RPHYHA+++G DFKD
Sbjct 75 RKNPESLDNTEFQRFMKRLRKKYPHKIRFFH-CGEYGDQNKRPHYHALLFG---HDFKDK 130
Query 182 RIKDFNKLGQPRYISKSFERIWGNGYCVLAPVNWNTCAYVSRYTMKKVYKSENSHAYASG 241
++ NK ++S+ +W G+ + V+++T AY +RY MKKV + Y
Sbjct 131 KLWS-NKGDFKLFVSQELAELWPYGFHTIGAVSFDTAAYCARYVMKKVTGDAAASHYREV 189
Query 242 QL----------PPFCTMSRRPGIG 256
L P +CTMSR PGIG
Sbjct 190 DLETGEVINEIKPEYCTMSRMPGIG 214
>gi|575096096|emb|CDL66976.1| unnamed protein product [uncultured bacterium]
Length=296
Score = 98.6 bits (244), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 88/298 (30%), Positives = 134/298 (45%), Gaps = 64/298 (21%)
Query 6 CFHPNHVVVRDGQFQFLGSAAYLKSGDLFYDNPVSFHTLVPCGRCMGCRLDRSRVWADRM 65
C +P+ +D F ++GS K + +D + LVPCG+C+ CRL R+ WA R
Sbjct 2 CTNPSIGYFKDDCFIYIGSLKGRKEQEFSHD-----YVLVPCGQCLECRLHRASEWALRC 56
Query 66 LLELKDNDYKALFVTLTYNDRSLPSAWHVGSNYFDGFYedvvplvldddeeWIaaaagap 125
ELK +D K +F+TLTYND +LP
Sbjct 57 CHELKSHD-KGIFLTLTYNDDNLPP----------------------------------N 81
Query 126 aTLSIRDTQLFMKrlrktfrd----rrlrfflAGEYGPKTHRPHYHAIIYGLTLSDFKDC 181
TL + Q F+KRLR+ ++R+ AGEYG + RPHYH +++G SD +
Sbjct 82 GTLVKKHVQDFIKRLRRHIDYYGDCTKIRYLCAGEYGDLSLRPHYHLLVFGYYPSDPR-- 139
Query 182 RIKDFNKLGQPR-YISKSFERIWGNGYCVLAPVNWNTCAYVSRYTMKKVYKSENSHAYAS 240
+ K+G+ + S + ++WG G+ + + + Y +Y +KK E+SH Y
Sbjct 140 LLHGLQKIGKNSLFTSPTLTKLWGKGHISFGAITFESARYTCQYALKKQ-TGEHSHYYVD 198
Query 241 -GQLPPFCTMSRRPGIGLLHADDLLKKGDKTFIRD-IDLNGKE----------CTREV 286
G +P F S R G+G D D F R + +NGK+ C RE+
Sbjct 199 RGVIPEFMICSNRNGLGY----DFAVSHDNMFERGYLTMNGKKIGIPRYYQKICEREI 252
>gi|313766924|gb|ADR80651.1| putative replication initiation protein [Uncultured Microviridae]
Length=285
Score = 92.4 bits (228), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 65/223 (29%), Positives = 97/223 (43%), Gaps = 36/223 (16%)
Query 45 VPCGRCMGCRLDRSRVWADRMLLE--LKDNDYKALFVTLTYNDRSLPSAWHVGSNYFDGF 102
V C +C+GCRLD + +WA R+ E L D+ F+TLTY++ LP W + ++F F
Sbjct 3 VACSQCIGCRLDHAGMWASRIEHESSLYDDSNGNCFITLTYDEEHLPQDWSLDKSHFQKF 62
Query 103 YedvvplvldddeeWIaaaagapaTLSIRDTQLFMKrlrktfrdrrlrfflAGEYGPKTH 162
+ + + G I T G
Sbjct 63 MKRLRKRYPQKIRYYHCGEYGENCRHGIHTTLCP---------------------GCNVG 101
Query 163 RPHYHAIIYGLTLSDFKDCRIKDFNKLGQPRYISKSFERIWGNGYCVLAPVNWNTCAYVS 222
RPHYHAI++ + DF D R+ G P + S + IWG+G+ + + + YV+
Sbjct 102 RPHYHAILFNI---DFHD-RVLVGQSKGIPHFTSDTLTEIWGHGFTQVGDLTAQSAGYVA 157
Query 223 RYTMKKVYKSENSHAYASGQL---------PPFCTMSRRPGIG 256
RY +KKV ++ Y S L P + TMSR+PGIG
Sbjct 158 RYALKKVTGTQAEDHYRSIDLTTGEVTYVRPEYATMSRKPGIG 200
Lambda K H a alpha
0.325 0.140 0.446 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 2743904169720