bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
49,011,213 sequences; 17,563,301,199 total letters
Query= Contig-25_CDS_annotation_glimmer3.pl_2_2
Length=76
Score E
Sequences producing significant alignments: (Bits) Value
gi|575094572|emb|CDL65928.1| unnamed protein product 105 8e-25
gi|575096056|emb|CDL66947.1| unnamed protein product 103 7e-24
gi|575094544|emb|CDL65904.1| unnamed protein product 103 7e-24
gi|575094492|emb|CDL65859.1| unnamed protein product 95.9 3e-21
gi|575094496|emb|CDL65862.1| unnamed protein product 93.6 2e-20
gi|575094415|emb|CDL65790.1| unnamed protein product 79.3 2e-15
gi|19387569|ref|NP_598320.1| capsid protein 72.4 6e-13
gi|9634949|ref|NP_054647.1| structural protein 72.4 8e-13
gi|47566141|ref|YP_022479.1| structural protein 71.6 1e-12
gi|77020115|ref|YP_338238.1| putative major coat protein 70.9 3e-12
>gi|575094572|emb|CDL65928.1| unnamed protein product [uncultured bacterium]
Length=556
Score = 105 bits (263), Expect = 8e-25, Method: Composition-based stats.
Identities = 48/75 (64%), Positives = 55/75 (73%), Gaps = 0/75 (0%)
Query 1 MRPGVTNSLAHWHLADHYAKVPTLSDGWIREDKANVDRVLAVQSSVADQFWCDLWISNMC 60
MR SL WHL D Y+ +P LSD WIREDK NVDRVLAV SSV+DQ + D++I N
Sbjct 481 MRSSAPQSLDVWHLGDDYSSLPYLSDSWIREDKTNVDRVLAVTSSVSDQLFADIYICNKA 540
Query 61 TRPMPMYSIPGSLDH 75
TRPMPMYSIPG +DH
Sbjct 541 TRPMPMYSIPGLIDH 555
>gi|575096056|emb|CDL66947.1| unnamed protein product [uncultured bacterium]
Length=570
Score = 103 bits (257), Expect = 7e-24, Method: Composition-based stats.
Identities = 43/75 (57%), Positives = 56/75 (75%), Gaps = 0/75 (0%)
Query 1 MRPGVTNSLAHWHLADHYAKVPTLSDGWIREDKANVDRVLAVQSSVADQFWCDLWISNMC 60
MR SL WHLAD Y+K+P+LSD WIRED ++RVLAV ++QF+ D+++ N+C
Sbjct 495 MRSSYAQSLDVWHLADDYSKLPSLSDEWIREDAKTLNRVLAVSDQNSNQFFADIYVKNLC 554
Query 61 TRPMPMYSIPGSLDH 75
TRPMPMYSIPG +DH
Sbjct 555 TRPMPMYSIPGLIDH 569
>gi|575094544|emb|CDL65904.1| unnamed protein product [uncultured bacterium]
Length=551
Score = 103 bits (256), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 46/76 (61%), Positives = 56/76 (74%), Gaps = 0/76 (0%)
Query 1 MRPGVTNSLAHWHLADHYAKVPTLSDGWIREDKANVDRVLAVQSSVADQFWCDLWISNMC 60
MR SL WHLAD YA +P+LSD WIRE + VDRVLAV S+V+ Q +CD++I N
Sbjct 476 MRSAAPQSLDVWHLADDYASLPSLSDSWIRESASTVDRVLAVSSNVSAQLFCDIYIQNRS 535
Query 61 TRPMPMYSIPGSLDHF 76
TRPMPMYS+PG +DHF
Sbjct 536 TRPMPMYSVPGLIDHF 551
>gi|575094492|emb|CDL65859.1| unnamed protein product [uncultured bacterium]
Length=551
Score = 95.9 bits (237), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 43/75 (57%), Positives = 54/75 (72%), Gaps = 0/75 (0%)
Query 1 MRPGVTNSLAHWHLADHYAKVPTLSDGWIREDKANVDRVLAVQSSVADQFWCDLWISNMC 60
MR SL WHLAD Y +P+LSD WIRED + V+RVLAV SV+ Q +CD++I +
Sbjct 476 MRSQYAQSLDIWHLADDYENLPSLSDSWIREDSSTVNRVLAVSDSVSAQLFCDIYIRCLA 535
Query 61 TRPMPMYSIPGSLDH 75
TRPMP+YSIPG +DH
Sbjct 536 TRPMPLYSIPGLIDH 550
>gi|575094496|emb|CDL65862.1| unnamed protein product [uncultured bacterium]
Length=568
Score = 93.6 bits (231), Expect = 2e-20, Method: Composition-based stats.
Identities = 41/75 (55%), Positives = 51/75 (68%), Gaps = 0/75 (0%)
Query 1 MRPGVTNSLAHWHLADHYAKVPTLSDGWIREDKANVDRVLAVQSSVADQFWCDLWISNMC 60
MR SL WH AD Y +P LS WI+EDK N+DRVLAV SSV++Q++ D +I N
Sbjct 493 MRSSARTSLDSWHFADDYNSLPKLSADWIKEDKTNIDRVLAVSSSVSNQYFADFYIENET 552
Query 61 TRPMPMYSIPGSLDH 75
TR +P YSIPG +DH
Sbjct 553 TRALPFYSIPGLIDH 567
>gi|575094415|emb|CDL65790.1| unnamed protein product [uncultured bacterium]
Length=569
Score = 79.3 bits (194), Expect = 2e-15, Method: Composition-based stats.
Identities = 34/71 (48%), Positives = 44/71 (62%), Gaps = 0/71 (0%)
Query 1 MRPGVTNSLAHWHLADHYAKVPTLSDGWIREDKANVDRVLAVQSSVADQFWCDLWISNMC 60
MR SL WH D Y +P LS+ WI+E + N+DR LAVQS + QF C+L+
Sbjct 495 MRSTYAQSLDAWHYGDKYTDLPRLSNDWIKEGQENIDRTLAVQSENSHQFICNLYFDQTW 554
Query 61 TRPMPMYSIPG 71
RPMP+YS+PG
Sbjct 555 VRPMPIYSVPG 565
>gi|19387569|ref|NP_598320.1| capsid protein [Spiroplasma phage 4]
gi|137968|sp|P11333.1|F_SPV4 RecName: Full=Capsid protein VP1; AltName: Full=VP1 [Spiroplasma
phage 4]
gi|334999|gb|AAA72621.1| capsid protein [Spiroplasma phage 4]
Length=553
Score = 72.4 bits (176), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 33/72 (46%), Positives = 45/72 (63%), Gaps = 1/72 (1%)
Query 1 MRPGVTNSLAHWHLADHYAKVPTLSDGWIREDKANVDRVLAVQSS-VADQFWCDLWISNM 59
MR SL +WH ADHYA++P LS W++ED NVDR LA+++S Q D + +
Sbjct 478 MRSSHPQSLDYWHFADHYAQLPKLSSEWLKEDYKNVDRTLALKASDNTPQLRVDFMFNTI 537
Query 60 CTRPMPMYSIPG 71
+PMP+YS PG
Sbjct 538 AEKPMPLYSTPG 549
>gi|9634949|ref|NP_054647.1| structural protein [Chlamydia phage 2]
gi|7406589|emb|CAB85589.1| structural protein [Chlamydia phage 2]
Length=565
Score = 72.4 bits (176), Expect = 8e-13, Method: Composition-based stats.
Identities = 37/75 (49%), Positives = 46/75 (61%), Gaps = 3/75 (4%)
Query 2 RPGVTNSLAHWHLADHYAKVPTLSDGWIREDKANVDRVLAVQSSVADQFWCDLWISNMCT 61
R T+SL WHLA + +PTLS +I E+ +DRVLAV S F D W S C
Sbjct 494 RSNATSSLDSWHLAQEFENLPTLSPEFIEENPP-MDRVLAV--STEPDFLLDGWFSLRCA 550
Query 62 RPMPMYSIPGSLDHF 76
RPMP+YS+PG +DHF
Sbjct 551 RPMPVYSVPGFIDHF 565
>gi|47566141|ref|YP_022479.1| structural protein [Chlamydia phage 3]
gi|47522476|emb|CAD79477.1| structural protein [Chlamydia phage 3]
Length=565
Score = 71.6 bits (174), Expect = 1e-12, Method: Composition-based stats.
Identities = 36/75 (48%), Positives = 46/75 (61%), Gaps = 3/75 (4%)
Query 2 RPGVTNSLAHWHLADHYAKVPTLSDGWIREDKANVDRVLAVQSSVADQFWCDLWISNMCT 61
R T+SL WHLA + +PTLS +I E+ +DRVLAV + F D W S C
Sbjct 494 RSNATSSLDSWHLAQEFENLPTLSPEFIEENPP-MDRVLAVSNE--PHFLLDGWFSLRCA 550
Query 62 RPMPMYSIPGSLDHF 76
RPMP+YS+PG +DHF
Sbjct 551 RPMPVYSVPGFIDHF 565
>gi|77020115|ref|YP_338238.1| putative major coat protein [Chlamydia phage 4]
gi|59940014|gb|AAX12543.1| putative major coat protein [Chlamydia phage 4]
Length=554
Score = 70.9 bits (172), Expect = 3e-12, Method: Composition-based stats.
Identities = 36/75 (48%), Positives = 46/75 (61%), Gaps = 3/75 (4%)
Query 2 RPGVTNSLAHWHLADHYAKVPTLSDGWIREDKANVDRVLAVQSSVADQFWCDLWISNMCT 61
R T+SL WHLA + +PTLS +I E+ +DRVLAV + F D W S C
Sbjct 483 RSNATSSLDSWHLAQEFENLPTLSPEFIEENPP-MDRVLAVNTE--PDFLLDGWFSLRCA 539
Query 62 RPMPMYSIPGSLDHF 76
RPMP+YS+PG +DHF
Sbjct 540 RPMPVYSVPGLIDHF 554
Lambda K H a alpha
0.323 0.134 0.466 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 442533451452