bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
49,011,213 sequences; 17,563,301,199 total letters
Query= Contig-18_CDS_annotation_glimmer3.pl_2_3
Length=680
Score E
Sequences producing significant alignments: (Bits) Value
gi|492501782|ref|WP_005867318.1| hypothetical protein 95.1 3e-17
gi|649557305|gb|KDS63784.1| capsid family protein 90.1 1e-16
gi|649569140|gb|KDS75238.1| capsid family protein 90.1 4e-16
gi|547920049|ref|WP_022322420.1| capsid protein VP1 91.7 5e-16
gi|649555287|gb|KDS61824.1| capsid family protein 90.5 1e-15
gi|494610271|ref|WP_007368517.1| capsid protein 81.3 9e-13
gi|647452987|ref|WP_025792807.1| hypothetical protein 77.0 2e-11
gi|599087863|gb|AHN52857.1| major capsid protein 60.5 5e-07
gi|599087807|gb|AHN52829.1| major capsid protein 59.7 9e-07
gi|609718276|emb|CDN73650.1| conserved hypothetical protein 61.2 2e-06
>gi|492501782|ref|WP_005867318.1| hypothetical protein [Parabacteroides distasonis]
gi|409230408|gb|EKN23272.1| hypothetical protein HMPREF1059_03257 [Parabacteroides distasonis
CL09T03C24]
Length=538
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 77/264 (29%), Positives = 126/264 (48%), Gaps = 17/264 (6%)
Query 420 VDVSDGKLTMDALILQKKIFNMLNRVAITDGTYQAWREATYGIRSTTLP-ESPIFCGGMQ 478
V+V + ++++ L + R A + Y + +G+RS+ + P F GG +
Sbjct 289 VNVDELGVSINDLRTSNALQRWFERNARSGSRYIEQILSHFGVRSSDARLQRPQFLGGGR 348
Query 479 SEIAFDEIVSNAATDE-EPLGTLAGRGVATMYKSGRGLKIKCTEPCMIMALGSITPRIDY 537
+ I+ E++ +ATD P +AG G++ G K E I+ + SI PR Y
Sbjct 349 TPISVSEVLQTSATDSTSPQANMAGHGISA--GVNHGFKRYFEEHGYIIGIMSIRPRTGY 406
Query 538 SQG-NKWWTRLQNMDDFHKPTLDAIGFQELIaeeaaawsteatGNHELVYQSLGKQPSWI 596
QG K + + NMD F+ P +G QE+ EE T A+ N + G P +
Sbjct 407 QQGVPKDFRKFDNMD-FYFPEFAHLGEQEIKNEEVYLQQTPASNN-----GTFGYTPRYA 460
Query 597 EYTTDVNETYGDFAAGMPLAFMCLNRVYEENSDHTIANASTYIDPTIYNKIFAESRLSSQ 656
EY +NE +GDF M AF LNR++ E+ + +T+++ N++FA + S
Sbjct 461 EYKYSMNEVHGDFRGNM--AFWHLNRIFSESPNLN----TTFVECNPSNRVFATAETSDD 514
Query 657 NFWVQVAFDVTARRVMSAKQIPNL 680
+W+Q+ DV A R+M P L
Sbjct 515 KYWIQLYQDVKALRLMPKYGTPML 538
>gi|649557305|gb|KDS63784.1| capsid family protein [Parabacteroides distasonis str. 3999B
T(B) 4]
gi|649559156|gb|KDS65543.1| capsid family protein [Parabacteroides distasonis str. 3999B
T(B) 6]
Length=245
Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 68/226 (30%), Positives = 109/226 (48%), Gaps = 17/226 (8%)
Query 458 ATYGIRSTTLP-ESPIFCGGMQSEIAFDEIVSNAATDE-EPLGTLAGRGVATMYKSGRGL 515
+ +G+RS+ + P F GG ++ I+ E++ ++TD P +AG G++ G
Sbjct 34 SHFGVRSSDARLQRPQFLGGGRTPISVSEVLQTSSTDSTSPQANMAGHGISA--GVNHGF 91
Query 516 KIKCTEPCMIMALGSITPRIDYSQG-NKWWTRLQNMDDFHKPTLDAIGFQELIaeeaaaw 574
E IM + SI PR Y QG K + + NMD F+ P +G QE+ EE
Sbjct 92 TRYFEEHGYIMGIMSIRPRTGYQQGVPKDFRKFDNMD-FYFPEFAHLGEQEIKNEELYLN 150
Query 575 steatGNHELVYQSLGKQPSWIEYTTDVNETYGDFAAGMPLAFMCLNRVYEENSDHTIAN 634
++A + G P + EY NE +GDF M AF LNR+++E +
Sbjct 151 ESDAANE-----GTFGYTPRYAEYKYSQNEVHGDFRGNM--AFWHLNRIFKEKPNLN--- 200
Query 635 ASTYIDPTIYNKIFAESRLSSQNFWVQVAFDVTARRVMSAKQIPNL 680
+T+++ N++FA + S +WVQ+ D+ A R+M P L
Sbjct 201 -TTFVECNPSNRVFATAETSDDKYWVQIYQDIKALRLMPKYGTPML 245
>gi|649569140|gb|KDS75238.1| capsid family protein, partial [Parabacteroides distasonis str.
3999B T(B) 6]
Length=390
Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 68/226 (30%), Positives = 107/226 (47%), Gaps = 17/226 (8%)
Query 458 ATYGIRSTTLP-ESPIFCGGMQSEIAFDEIVSNAATDE-EPLGTLAGRGVATMYKSGRGL 515
+ +G+RS+ + P F GG ++ I+ E++ ++TD P +AG G++ G
Sbjct 179 SHFGVRSSDARLQRPQFLGGGRTPISVSEVLQTSSTDSTSPQANMAGHGISA--GVNHGF 236
Query 516 KIKCTEPCMIMALGSITPRIDYSQG-NKWWTRLQNMDDFHKPTLDAIGFQELIaeeaaaw 574
E IM + SI PR Y QG K + + NMD F+ P +G QE I E
Sbjct 237 TRYFEEHGYIMGIMSIRPRTGYQQGVPKDFRKFDNMD-FYFPEFAHLGEQE-IKNEELYL 294
Query 575 steatGNHELVYQSLGKQPSWIEYTTDVNETYGDFAAGMPLAFMCLNRVYEENSDHTIAN 634
+ N + G P + EY NE +GDF M AF LNR+++E +
Sbjct 295 NESDAANE----GTFGYTPRYAEYKYSQNEVHGDFRGNM--AFWHLNRIFKEKPNLN--- 345
Query 635 ASTYIDPTIYNKIFAESRLSSQNFWVQVAFDVTARRVMSAKQIPNL 680
+T+++ N++FA + S +WVQ+ D+ A R+M P L
Sbjct 346 -TTFVECNPSNRVFATAETSDDKYWVQIYQDIKALRLMPKYGTPML 390
>gi|547920049|ref|WP_022322420.1| capsid protein VP1 [Parabacteroides merdae CAG:48]
gi|524592961|emb|CDD13573.1| capsid protein VP1 [Parabacteroides merdae CAG:48]
Length=553
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 76/269 (28%), Positives = 123/269 (46%), Gaps = 17/269 (6%)
Query 415 NAITAVDVSDGKLTMDALILQKKIFNMLNRVAITDGTYQAWREATYGIRSTTLP-ESPIF 473
N V+V + + ++ L + R A Y + +G+RS+ + P F
Sbjct 299 NGTLKVNVDEMGININDLRTSNALQRWFERNARGGSRYIEQILSHFGVRSSDARLQRPQF 358
Query 474 CGGMQSEIAFDEIVSNAATDE-EPLGTLAGRGVATMYKSGRGLKIKCTEPCMIMALGSIT 532
GG + I+ E++ ++TDE P +AG G++ +G K E I+ + SIT
Sbjct 359 LGGGRMPISVSEVLQTSSTDETSPQANMAGHGISAGINNG--FKHYFEEHGYIIGIMSIT 416
Query 533 PRIDYSQG-NKWWTRLQNMDDFHKPTLDAIGFQELIaeeaaawsteatGNHELVYQSLGK 591
PR Y QG + +T+ NMD F+ P + QE+ +E A N + G
Sbjct 417 PRSGYQQGVPRDFTKFDNMD-FYFPEFAHLSEQEIKNQELFVSEDAAYNN-----GTFGY 470
Query 592 QPSWIEYTTDVNETYGDFAAGMPLAFMCLNRVYEENSDHTIANASTYIDPTIYNKIFAES 651
P + EY +E +GDF L+F LNR++E+ + +T+++ N++FA S
Sbjct 471 TPRYAEYKYHPSEAHGDFRGN--LSFWHLNRIFEDKPNLN----TTFVECKPSNRVFATS 524
Query 652 RLSSQNFWVQVAFDVTARRVMSAKQIPNL 680
FWVQ+ DV A R+M P L
Sbjct 525 ETEDDKFWVQMYQDVKALRLMPKYGTPML 553
>gi|649555287|gb|KDS61824.1| capsid family protein [Parabacteroides distasonis str. 3999B
T(B) 4]
gi|649560568|gb|KDS66876.1| capsid family protein [Parabacteroides distasonis str. 3999B
T(B) 4]
gi|649561020|gb|KDS67307.1| capsid family protein [Parabacteroides distasonis str. 3999B
T(B) 4]
gi|649562724|gb|KDS68908.1| capsid family protein [Parabacteroides distasonis str. 3999B
T(B) 6]
Length=541
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 107/234 (46%), Gaps = 33/234 (14%)
Query 458 ATYGIRSTTLP-ESPIFCGGMQSEIAFDEIVSNAATDE-EPLGTLAGRGVATMYKSGRGL 515
+ +G+RS+ + P F GG ++ I+ E++ ++TD P +AG G++ G
Sbjct 330 SHFGVRSSDARLQRPQFLGGGRTPISVSEVLQTSSTDSTSPQANMAGHGISA--GVNHGF 387
Query 516 KIKCTEPCMIMALGSITPRIDYSQG-NKWWTRLQNMDDFHKPTLDAIGFQELIaeeaaaw 574
E IM + SI PR Y QG K + + NMD F+ P +G QE+
Sbjct 388 TRYFEEHGYIMGIMSIRPRTGYQQGVPKDFRKFDNMD-FYFPEFAHLGEQEI-------- 438
Query 575 steatGNHELVYQ--------SLGKQPSWIEYTTDVNETYGDFAAGMPLAFMCLNRVYEE 626
N EL + G P + EY NE +GDF M AF LNR+++E
Sbjct 439 -----KNEELYLNESDAANEGTFGYTPRYAEYKYSQNEVHGDFRGNM--AFWHLNRIFKE 491
Query 627 NSDHTIANASTYIDPTIYNKIFAESRLSSQNFWVQVAFDVTARRVMSAKQIPNL 680
+ +T+++ N++FA + S +WVQ+ D+ A R+M P L
Sbjct 492 KPNLN----TTFVECNPSNRVFATAETSDDKYWVQIYQDIKALRLMPKYGTPML 541
>gi|494610271|ref|WP_007368517.1| capsid protein [Prevotella multiformis]
gi|324988543|gb|EGC20506.1| putative capsid protein (F protein) [Prevotella multiformis DSM
16608]
Length=531
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 79/314 (25%), Positives = 137/314 (44%), Gaps = 55/314 (18%)
Query 407 IDGTTGGINAITAVDVSD--GKLTMDALILQKKIFNMLNRVAITDGTYQAWREATYGIRS 464
+ G + IN ++ + V+D +D ++ + N L+ Y + EA +G R
Sbjct 233 VSGASTFINGVSVLSVNDLRAAFALDKMLEATRRANGLD--------YSSQIEAHFGFR- 283
Query 465 TTLPESPI----FCGGMQSEIAFDEIVSNA----ATDEEP-LGTLAGRGVATMYKSGRGL 515
+PES F GG + + E+V+ + DE P LG L G+GV ++ S
Sbjct 284 --VPESRAGDARFIGGFDNPVVISEVVNQSEFDRGADESPCLGDLGGKGVGSLNSSSIDF 341
Query 516 KIKCTEPCMIMALGSITPRIDYSQGNKW--WTRLQNMDDFHKPTLDAIGFQELIae---- 569
+K E +IM + S+ P+ +Y G + + R +DF +P +G+Q ++
Sbjct 342 DVK--EHGIIMCIYSVVPQTEY-NGTYFDPFNRKLRREDFFQPEFADLGYQPVVTSDLIS 398
Query 570 -------------eaaawsteatGNHELVYQSLGKQPSWIEYTTDVNETYGDFAAGMPLA 616
+ + + E + LG Q + EY T + +G+F +G+ L+
Sbjct 399 TYLDNPVPDGPEKQKRLAAGYPLSSIEANNRLLGWQVRYNEYKTSRDLVFGEFESGLSLS 458
Query 617 FMCLNRVYE-----ENSDHTIAN-----ASTYIDPTIYNKIFAESRLSSQNFWVQVAFDV 666
+ C R Y+ + D + N A Y++P+I N IF S + + +F V FDV
Sbjct 459 YWCSPR-YDFGFDGKAGDKKLVNSPWSPAHFYVNPSILNTIFLVSAVKADHFLVNSFFDV 517
Query 667 TARRVMSAKQIPNL 680
A R MS + L
Sbjct 518 KAVRPMSVSGLAGL 531
>gi|647452987|ref|WP_025792807.1| hypothetical protein [Prevotella histicola]
Length=584
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 73/270 (27%), Positives = 118/270 (44%), Gaps = 50/270 (19%)
Query 452 YQAWREATYGIRSTTLPESPI----FCGGMQSEIAFDEIVS---NAATD--EEPLGTLAG 502
Y + EA +G + +PES F GG + I E+VS NAA+D +G L G
Sbjct 324 YASQIEAHFGFK---VPESRANDARFLGGFDNSIVVSEVVSTNGNAASDGSHASIGDLGG 380
Query 503 RGVATMYKSGRGLKIKCTEPCMIMALGSITPRIDYSQG-----NKWWTRLQNMDDFHKPT 557
+G+ +M S ++ TE +IM + S+ P+ +Y+ N+ TR Q F++P
Sbjct 381 KGIGSM--SSGTIEFDSTEHGIIMCIYSVAPQSEYNASYLDPFNRKLTREQ----FYQPE 434
Query 558 LDAIGFQELI------aeeaaawsteatGNHELVYQSLGKQPSWIEYTTDVNETYGDFAA 611
+G+Q LI + + EL LG Q + EY T + +GDF +
Sbjct 435 FADLGYQALIGSDLICSTLGMNEKQAGFSDIELNNNLLGYQVRYNEYKTARDLVFGDFES 494
Query 612 GMPLAFMCLNRV--------------------YEENSDHTI-ANASTYIDPTIYNKIFAE 650
G L++ C R Y + + + ++ + YI+P + N IF
Sbjct 495 GKSLSYWCTPRFDFGYGDTEKKIAPENKGGADYRKKGNRSHWSSRNFYINPNLVNPIFLT 554
Query 651 SRLSSQNFWVQVAFDVTARRVMSAKQIPNL 680
S + + +F V DV A R MS + +L
Sbjct 555 SAVQADHFIVNSFLDVKAVRPMSVTGLSSL 584
>gi|599087863|gb|AHN52857.1| major capsid protein, partial [uncultured Gokushovirinae]
Length=219
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/167 (28%), Positives = 80/167 (48%), Gaps = 9/167 (5%)
Query 407 IDGTTGGINAITAVDVSDG-KLTMDALILQKKIFNMLNRVAITDGTYQAWREATYGIRST 465
+ G T ++ + D+++ T++ L +I ML R A Y ++ +G+ S
Sbjct 51 VSGDTSAVSNVMYADLTEATAATINQLRQAFQIQKMLERDARGGTRYTEIIKSHFGVTSP 110
Query 466 TLP-ESPIFCGGMQSEIAFDEIVSNAATDEE---PLGTLAGRGVATMYKSGRGLKIKCTE 521
+ P + GG + + + + + TD++ P GTLA G A + G G TE
Sbjct 111 DARLQRPEYLGGGSTPVIINPVAQTSGTDQQSDTPQGTLAAIGTAQV--RGHGFTKSFTE 168
Query 522 PCMIMALGSITPRIDYSQG-NKWWTRLQNMDDFHKPTLDAIGFQELI 567
C+I+ L S+ + Y QG N+ W R Q D++ P L +G QE++
Sbjct 169 HCIILGLVSVRADLTYQQGLNRMWNR-QTRYDYYFPALSHLGEQEIL 214
>gi|599087807|gb|AHN52829.1| major capsid protein, partial [uncultured Gokushovirinae]
Length=224
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 71/145 (49%), Gaps = 8/145 (6%)
Query 428 TMDALILQKKIFNMLNRVAITDGTYQAWREATYGIRSTTLP-ESPIFCGGMQSEIAFDEI 486
T++AL ++ +L R A Y +A +G+ S + P + GG S + I
Sbjct 78 TINALRTGFQVQRLLERDARGGTRYTEVIKAHFGVTSPDARLQRPEYLGGGSSPVNITPI 137
Query 487 VSNAATD---EEPLGTLAGRGVATMYKSGRGLKIKCTEPCMIMALGSITPRIDYSQG-NK 542
S TD EPLGTLAG V T + S G TE C+I+ L ++ + Y QG N+
Sbjct 138 GSTVPTDLDPGEPLGTLAG--VGTAHISNHGFTKSFTEHCVIIGLVNVRADLTYQQGLNR 195
Query 543 WWTRLQNMDDFHKPTLDAIGFQELI 567
W+R Q D++ P L IG Q ++
Sbjct 196 MWSR-QTRYDYYWPALSHIGEQGVL 219
>gi|609718276|emb|CDN73650.1| conserved hypothetical protein [Elizabethkingia anophelis]
Length=537
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/206 (26%), Positives = 90/206 (44%), Gaps = 10/206 (5%)
Query 469 ESPIFCGGMQSEIAFDEIVSNAATDE-EPLGTLAGRGVATMYKSGRGLKIKCTEPCMIMA 527
+ P F GG +S I E++ +ATD P G +AG G+ + K G G E ++
Sbjct 332 QRPEFLGGNKSPIMISEVLQQSATDSTTPQGNMAGHGIG-IGKDG-GFSRFFEEHGYVIG 389
Query 528 LGSITPRIDYSQGNKWWTRLQNMDDFHKPTLDAIGFQELIaeeaaawsteatGNHELVYQ 587
L S+ P+ YSQG + D+ P + IG ++ + + + E V+
Sbjct 390 LMSVIPKTSYSQGIPRHFSKSDKFDYFWPQFEHIG-EQPVYNKEIFAKNIDAFDSEAVF- 447
Query 588 SLGKQPSWIEYTTDVNETYGDFAAGMPLAFMCLNRVYEENSDHTIANASTYIDPTIYNKI 647
G P + EY + +GDF L F L R+++ + + + D ++I
Sbjct 448 --GYLPRYSEYKFSPSTVHGDFKDD--LYFWHLGRIFDTDKPPVLNQSFIECDKNALSRI 503
Query 648 FAESRLSSQNFWVQVAFDVTARRVMS 673
FA + F+ + +TA+R MS
Sbjct 504 FAVED-DTDKFYCHLYQKITAKRKMS 528
Lambda K H a alpha
0.317 0.133 0.399 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 5232445671600