bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
49,011,213 sequences; 17,563,301,199 total letters
Query= Contig-16_CDS_annotation_glimmer3.pl_2_6
Length=270
Score E
Sequences producing significant alignments: (Bits) Value
gi|547312922|ref|WP_022044634.1| putative replication initiation... 78.6 1e-13
gi|609718275|emb|CDN73649.1| conserved hypothetical protein 60.1 2e-07
gi|649562725|gb|KDS68909.1| hypothetical protein M096_3339 47.4 0.004
gi|492501778|ref|WP_005867316.1| hypothetical protein 47.8 0.004
gi|649555288|gb|KDS61825.1| hypothetical protein M095_3808 46.6 0.009
gi|575094557|emb|CDL65915.1| unnamed protein product 45.8 0.018
gi|568293148|gb|ETN80369.1| hypothetical protein NECAME_18023 44.7 0.041
gi|575094374|emb|CDL65755.1| unnamed protein product 42.4 0.24
>gi|547312922|ref|WP_022044634.1| putative replication initiation protein [Alistipes finegoldii
CAG:68]
gi|524208442|emb|CCZ76638.1| putative replication initiation protein [Alistipes finegoldii
CAG:68]
Length=320
Score = 78.6 bits (192), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/205 (27%), Positives = 97/205 (47%), Gaps = 30/205 (15%)
Query 4 ELRHDP--NAYFMTLTFSEEKLEEYKKLCNSEDPNTIATKAMRLMLERCRRKLKHSIKHW 61
ELR P F+TLTF+++ LE++ K N KA+RL L+R R+ I+HW
Sbjct 65 ELRKYPPGTCLFVTLTFNDDSLEKFSKDTN---------KAVRLFLDRFRKVYGKQIRHW 115
Query 62 FITELGHNGTERMHLHGLVWGI-------------GMDKLVEEKWQNGIVFTGTFVNEkt 108
F+ E G R H HG+++ + G L+ W+ G VF G +E
Sbjct 116 FVCEFG-TLHGRPHYHGILFNVPQALIDGYDSDMPGHHPLLASCWKYGFVFVGYVSDETC 174
Query 109 inyitkyitktDEYHKEFIGQILCSAGIGNGYTQRSDAQKHTYKKG-ETIETYRLRNGAK 167
+ + +++ S GIG+ Y ++ H K G + + + + NG +
Sbjct 175 SYITKYVTKSING--DKVRPRVISSFGIGSNYLNTEESSLH--KLGNQRYQPFMVLNGFQ 230
Query 168 INLPTYYRNKLFTEEEREKLWIDKI 192
+P YY NK+F++ +++ + +D++
Sbjct 231 QAMPRYYYNKIFSDVDKQNMVVDRL 255
>gi|609718275|emb|CDN73649.1| conserved hypothetical protein [Elizabethkingia anophelis]
Length=265
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 88/191 (46%), Gaps = 17/191 (9%)
Query 1 MSEELRHDPNAYFMTLTFSEEKLEEYKKLCNSEDPNTIATKAMRLMLERCRRKLKHSIKH 60
++EEL+ +A+F+TLT+S+ L S D + +L ++R R+ K IK+
Sbjct 43 LTEELKVSKSAHFVTLTYSDVYLPYSDNGLISLD-----YRDFQLFMKRARKLQKSKIKY 97
Query 61 WFITELGHNGTERMHLHGLVWGI-GMDKLVEEKWQNGIVFTGTFVNEktinyitkyitkt 119
+ + E G T R H H +V+G+ +D + E W+ G V GT + +
Sbjct 98 FLVGEYGAQ-TYRPHYHAIVFGVENIDAFLGE-WRMGNVHAGTVTAKSIYYTLKYCTKSI 155
Query 120 DE------YHKEFIGQILCSAGIGNGYTQRSDAQKHTYKKGETIETYRLRNGAKINLPTY 173
E + L S G+G + S + Y K + ++ L G I LP Y
Sbjct 156 TEGPDKDPDDDRKPEKALMSKGLGLSHLTESMIK---YYKDDVSRSFSLLGGTTIALPRY 212
Query 174 YRNKLFTEEER 184
YR+K+F++ E+
Sbjct 213 YRDKVFSDIEK 223
>gi|649562725|gb|KDS68909.1| hypothetical protein M096_3339 [Parabacteroides distasonis str.
3999B T(B) 6]
Length=250
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 50/217 (23%), Positives = 89/217 (41%), Gaps = 49/217 (23%)
Query 1 MSEELRHDPNAYFMTLTFSEEKLEEYKKLCNSED-----PNTIATKAMRLMLERCRRKL- 54
M E P + F+TLT+ +E + ED ++ + ++L ++R R+K
Sbjct 1 MQAEADEYPFSLFVTLTYDDEHIP---TAMIGEDLFKTTVGVVSKRDIQLFMKRLRKKYA 57
Query 55 KHSIKHWFITELGHNGTERMHLHGLVWGIGMD-----KLVEEKWQNGIVFTGTFVNEkti 109
++ ++++ +E G G R H H +++G L+ E W+NG FV +
Sbjct 58 QYRLRYFLTSEYGSQGG-RPHYHMILFGFPFTGKHGGDLLAECWKNG------FVQAHPL 110
Query 110 nyitkyitktDEYHKEFIGQIL-----------CSAGIGNGYTQRSDAQKHTYKKGETIE 158
Y K I IL CS G GY + + + ++
Sbjct 111 TTKEISYVTKYMYEKSMIPDILKGVKEYQPFMLCSKMPGIGYH---------FLREQILD 161
Query 159 TYRLR--------NGAKINLPTYYRNKLFTEEEREKL 187
YRL NG ++ +P YY +KL+ ++ +E L
Sbjct 162 FYRLHPRDYVRAFNGMRMAMPRYYADKLYDDDMKEYL 198
>gi|492501778|ref|WP_005867316.1| hypothetical protein [Parabacteroides distasonis]
gi|409230407|gb|EKN23271.1| hypothetical protein HMPREF1059_03256 [Parabacteroides distasonis
CL09T03C24]
Length=284
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 47/203 (23%), Positives = 90/203 (44%), Gaps = 37/203 (18%)
Query 9 PNAYFMTLTFSEEKLEEY---KKLCNSEDPNTIATKAMRLMLERCRRKL-KHSIKHWFIT 64
P + F+TLT+ +E + + L S ++ + ++L ++R R+K ++ ++++ +
Sbjct 43 PFSLFVTLTYDDEHMPTAMIGEDLFKST-VGVVSKRDIQLFMKRLRKKYDQYRLRYFLTS 101
Query 65 ELGHNGTERMHLHGLVWGIGMD-----KLVEEKWQNGIVFTG-------TFVNEktinyi 112
E G G R H H +++G L+ E W+NG V +V +
Sbjct 102 EYGSQGG-RPHYHMILFGFPFTGKHGGDLLAECWKNGFVQAHPLTTKEIAYVTKYMYEKS 160
Query 113 tkyitktDEYHKEFIGQILCSAGIGNGYTQRSDAQKHTYKKGETIETYRLR--------N 164
D KE+ +LCS G GY + + + ++ YRL N
Sbjct 161 MVPDILKDV--KEYQPFMLCSRIPGIGYH---------FLREQILDFYRLHPRDYVRAFN 209
Query 165 GAKINLPTYYRNKLFTEEEREKL 187
G ++ +P YY +KL+ ++ +E L
Sbjct 210 GMRMAMPRYYADKLYDDDMKEYL 232
>gi|649555288|gb|KDS61825.1| hypothetical protein M095_3808 [Parabacteroides distasonis str.
3999B T(B) 4]
gi|649560564|gb|KDS66872.1| hypothetical protein M095_2449 [Parabacteroides distasonis str.
3999B T(B) 4]
gi|649561011|gb|KDS67298.1| hypothetical protein M095_2409 [Parabacteroides distasonis str.
3999B T(B) 4]
Length=284
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 48/209 (23%), Positives = 87/209 (42%), Gaps = 49/209 (23%)
Query 9 PNAYFMTLTFSEEKLEEYKKLCNSED-----PNTIATKAMRLMLERCRRKL-KHSIKHWF 62
P + F+TLT+ +E + ED ++ + ++L ++R R+K ++ ++++
Sbjct 43 PFSLFVTLTYDDEHIPT---AMIGEDLFKTTVGVVSKRDIQLFMKRLRKKYAQYRLRYFL 99
Query 63 ITELGHNGTERMHLHGLVWGIGMD-----KLVEEKWQNGIVFTGTFVNEktinyitkyit 117
+E G G R H H +++G L+ E W+NG FV +
Sbjct 100 TSEYGSQGG-RPHYHMILFGFPFTGKHGGDLLAECWKNG------FVQAHPLTTKEISYV 152
Query 118 ktDEYHKEFIGQIL-----------CSAGIGNGYTQRSDAQKHTYKKGETIETYRLR--- 163
Y K I IL CS G GY + + + ++ YRL
Sbjct 153 TKYMYEKSMIPDILKGVKEYQPFMLCSKMPGIGYH---------FLREQILDFYRLHPRD 203
Query 164 -----NGAKINLPTYYRNKLFTEEEREKL 187
NG ++ +P YY +KL+ ++ +E L
Sbjct 204 YVRAFNGMRMAMPRYYADKLYDDDMKEYL 232
>gi|575094557|emb|CDL65915.1| unnamed protein product [uncultured bacterium]
Length=354
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 31/87 (36%), Positives = 48/87 (55%), Gaps = 12/87 (14%)
Query 3 EELRHDPNAYFMTLTFSEEKLEEYKKLCNSEDPNTIATKAMRLMLERCRRKL------KH 56
E L HD A F+TLT+SE+ Y + S T++ + ++L L+R RR L KH
Sbjct 53 EMLGHDSGA-FVTLTYSED----YVPVTESGH-RTLSLRDLQLFLKRLRRNLEERKRSKH 106
Query 57 SIKHWFITELGHNGTERMHLHGLVWGI 83
I+++ E G GT+R H H + +G+
Sbjct 107 PIRYYACGEYGTRGTQRPHYHIIFFGV 133
>gi|568293148|gb|ETN80369.1| hypothetical protein NECAME_18023 [Necator americanus]
Length=345
Score = 44.7 bits (104), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 86/205 (42%), Gaps = 37/205 (18%)
Query 1 MSEELRHDPNAYFMTLTFSEEKLEEYKKLCNSEDPNTIATKAMRLMLERCRRKLKHSIKH 60
+ EEL+H+ NA F+TLT+ + K + D RL RKLK+ +
Sbjct 41 LQEELQHE-NASFVTLTYDTRFVPISKNGFMTLDRGEFPRYMKRLRKLVPGRKLKYYM-- 97
Query 61 WFITELGHNGTERM--HLHGLVWGIGMDKLVEEKWQ-NG---------------IVFTGT 102
G G++R H H +++G+ D L + W NG I +T
Sbjct 98 -----CGEYGSQRFRPHYHAIIFGVPQDSLFADAWTLNGDSLGGVVVGTVTGKSIAYTMK 152
Query 103 FVNEktinyitkyitktDEYHKEFIGQILCSAGIGNGYTQRSDAQKHTYKKGETIETYRL 162
++++ T + E+ L S G+G Y Q Y K + +
Sbjct 153 YIDKSTWKQKHGRDDRVPEFS-------LMSKGMGVSYLT---PQMVEYHKEDISRLFCT 202
Query 163 R-NGAKINLPTYYRNKLFTEEEREK 186
R G++I +P YYR K++++++ +K
Sbjct 203 REGGSRIAMPRYYRQKIYSDDDLKK 227
>gi|575094374|emb|CDL65755.1| unnamed protein product [uncultured bacterium]
Length=487
Score = 42.4 bits (98), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 29/109 (27%), Positives = 48/109 (44%), Gaps = 10/109 (9%)
Query 2 SEELRHDPNAYFMTLTFSEEKLEEYKKLCNSEDPNTIATKAMRLMLERCRRKLKH---SI 58
SEEL ++ +YF TLT ++ Y L + + ++L L+R R+ L S+
Sbjct 47 SEELNNNSQSYFYTLTLDPRFIDTYGTLPDGSPRYVFNKRHIQLFLKRLRKALSKYNISL 106
Query 59 KHWFITELGHNGTERMHLHGLVW------GIGMDKLVEEKWQNGIVFTG 101
K+ + ELG T R H H + + +V W G + +G
Sbjct 107 KYVIVGELGET-THRPHYHAIFYLSSSVNPFKFRIMVRNSWSLGFIKSG 154
Lambda K H a alpha
0.318 0.134 0.417 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 1307084414250