bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
49,011,213 sequences; 17,563,301,199 total letters
Query= Contig-14_CDS_annotation_glimmer3.pl_2_7
Length=222
Score E
Sequences producing significant alignments: (Bits) Value
gi|547226430|ref|WP_021963493.1| putative uncharacterized protein 175 1e-47
gi|575094354|emb|CDL65742.1| unnamed protein product 157 4e-41
gi|496050829|ref|WP_008775336.1| hypothetical protein 141 2e-35
gi|490418709|ref|WP_004291032.1| hypothetical protein 139 1e-34
gi|494822885|ref|WP_007558293.1| hypothetical protein 116 2e-26
gi|517172762|ref|WP_018361580.1| hypothetical protein 89.0 7e-17
gi|575094321|emb|CDL65708.1| unnamed protein product 85.1 2e-15
gi|494306153|ref|WP_007173049.1| hypothetical protein 82.8 7e-15
gi|565841287|ref|WP_023924568.1| hypothetical protein 82.4 1e-14
gi|494308783|ref|WP_007173938.1| hypothetical protein 79.7 7e-14
>gi|547226430|ref|WP_021963493.1| putative uncharacterized protein [Prevotella sp. CAG:1185]
gi|524103382|emb|CCY83994.1| putative uncharacterized protein [Prevotella sp. CAG:1185]
Length=573
Score = 175 bits (444), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 97/223 (43%), Positives = 136/223 (61%), Gaps = 5/223 (2%)
Query 3 SHRCQRVCGFDGSIDISAVENTNLSSD-EAIIRGKGIGGYRVNKPETFKTTEHGVLMCIY 61
S C+ + G+ ++DIS V NTNL+ D +A I+GKG G NK + F+++EHG++MCIY
Sbjct 353 SGHCKYLGGWTSNLDISEVVNTNLTGDNQADIQGKGTGTLNGNKVD-FESSEHGIIMCIY 411
Query 62 HAVPLLDYAPTGPDLQFMTTVDGDSWPVPELDSVGFEEL-PSYSLLNTSDVQPIKEPRPF 120
H +PLLD++ Q T D + +PE DSVG ++L PS + D+
Sbjct 412 HCLPLLDWSINRIARQNFKTTFTD-YAIPEFDSVGMQQLYPSEMIFGLEDLPSDPSSINM 470
Query 121 GYVPRYISWKTSVDVVRGAFIDTLKSWTAPIGEDYMKIYFDNNNVPGGAHFGF-YTWFKV 179
GYVPRY KTS+D + G+FIDTL SW +P+ + Y+ Y G + Y +FKV
Sbjct 471 GYVPRYADLKTSIDEIHGSFIDTLVSWVSPLTDSYISAYRQACKDAGFSDITMTYNFFKV 530
Query 180 NPSVVNPIFGVVADGSWNTDQLLVNCDFDVRVARNLSYDGLPY 222
NP +V+ IFGV AD + NTDQLL+N FD++ RN Y+GLPY
Sbjct 531 NPHIVDNIFGVKADSTINTDQLLINSYFDIKAVRNFDYNGLPY 573
>gi|575094354|emb|CDL65742.1| unnamed protein product [uncultured bacterium]
Length=615
Score = 157 bits (397), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 98/234 (42%), Positives = 137/234 (59%), Gaps = 25/234 (11%)
Query 3 SHRCQRVCGFDGSIDISAVENTNLSSDEAI-IRGKGIGGYRVNKPETFKTT-EHGVLMCI 60
SH+ + + G S+DI+ V N N++ D A I GKG + N F++ E+G++MCI
Sbjct 393 SHQARYLGGCATSLDINEVINNNITGDNAADIAGKGT--FTGNGSIRFESKGEYGIIMCI 450
Query 61 YHAVPLLDYAPTGPDLQFMTTVDGDSWPVPELDSVGFEELPSYSLLNTSDVQPIKEPRP- 119
YH +P++DY +G D T VD S+P+PELD +G E +P +N P+KE
Sbjct 451 YHVLPIVDYVGSGVD-HSCTLVDATSFPIPELDQIGMESVPLVRAMN-----PVKESDTP 504
Query 120 -----FGYVPRYISWKTSVDVVRGAFIDTLKSWTAPIGEDYM----KIYFDNN-NV-PGG 168
GY PRYI WKTSVD G F D+L++W P+G+ + + F +N NV P
Sbjct 505 SADTFLGYAPRYIDWKTSVDRSVGDFADSLRTWCLPVGDKELTSANSLNFPSNPNVEPDS 564
Query 169 AHFGFYTWFKVNPSVVNPIFGVVADGSWNTDQLLVNCDFDVRVARNLSYDGLPY 222
GF FKVNPS+V+P+F VVAD + TD+ L + FDV+V RNL +GLPY
Sbjct 565 IAAGF---FKVNPSIVDPLFAVVADSTVKTDEFLCSSFFDVKVVRNLDVNGLPY 615
>gi|496050829|ref|WP_008775336.1| hypothetical protein [Bacteroides sp. 2_2_4]
gi|229448893|gb|EEO54684.1| putative capsid protein (F protein) [Bacteroides sp. 2_2_4]
Length=580
Score = 141 bits (355), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 93/220 (42%), Positives = 122/220 (55%), Gaps = 15/220 (7%)
Query 11 GFDGSIDISAVENTNLS-SDEAIIRGKGI--GGYRVNKPETFKTTE-HGVLMCIYHAVPL 66
G S+DI+ V N N++ S+ A I GKG+ G R+ +F E +G++MCIYH++PL
Sbjct 368 GTTASLDINEVVNNNITGSNAADIAGKGVVVGNGRI----SFDAGERYGLIMCIYHSLPL 423
Query 67 LDYAPTGPDLQFMTTVDGDSWPVPELDSVGFEELPSYSLLNTSDVQPIKEPRPFGYVPRY 126
LDY + F T ++ + +PE D VG E +P SL+N GY PRY
Sbjct 424 LDYTTDLVNPAF-TKINSTDFAIPEFDRVGMESVPLVSLMNPLQSSYNVGSSILGYAPRY 482
Query 127 ISWKTSVDVVRGAFIDTLKSWTAPIGE----DYMKIYFDNNNVPGGAHFGFYTWFKVNPS 182
IS+KT VD GAF TLKSW + + D NN PG YT FKVNP+
Sbjct 483 ISYKTDVDSSVGAFKTTLKSWVMSYDNQSVINQLNYQDDPNNSPG--TLVNYTNFKVNPN 540
Query 183 VVNPIFGVVADGSWNTDQLLVNCDFDVRVARNLSYDGLPY 222
V+P+F V A S +TDQ L + FDV+V RNL DGLPY
Sbjct 541 CVDPLFAVAASNSIDTDQFLCSSFFDVKVVRNLDTDGLPY 580
>gi|490418709|ref|WP_004291032.1| hypothetical protein [Bacteroides eggerthii]
gi|217986636|gb|EEC52970.1| putative capsid protein (F protein) [Bacteroides eggerthii DSM
20697]
Length=578
Score = 139 bits (349), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 92/232 (40%), Positives = 120/232 (52%), Gaps = 16/232 (7%)
Query 3 SHRCQRVCGFDGSIDISAVENTNLS-SDEAIIRGKGIGGYRVNKPETFKTT-EHGVLMCI 60
S C + G SIDI+ V NTN++ S A I GKG+G N F + +G++MCI
Sbjct 351 SELCTYLGGVSSSIDINEVINTNITGSAAADIAGKGVG--VANGEINFNSNGRYGLIMCI 408
Query 61 YHAVPLLDYAPTGPDLQFMTTVDGDSWPVPELDSVGFEELPSYSLLNTSDVQPIKEPRPF 120
YH +PLLDY D F+ V+ + +PE D VG + +P L+N
Sbjct 409 YHCLPLLDYTTDMLDPAFLK-VNSTDYAIPEFDRVGMQSMPLVQLMNPLRSFANASGLVL 467
Query 121 GYVPRYISWKTSVDVVRGAFIDTLKSWTAPIGEDYM--KIYFDNNN--------VPGGAH 170
GYVPRYI +KTSVD G F TL SW G + ++ N+ VP A
Sbjct 468 GYVPRYIDYKTSVDQSVGGFKRTLNSWVISYGNISVLKQVTLPNDAPPIEPSEPVPSVAP 527
Query 171 FGFYTWFKVNPSVVNPIFGVVADGSWNTDQLLVNCDFDVRVARNLSYDGLPY 222
F T+FKVNP ++PIF V A NTDQ L + FD++ RNL DGLPY
Sbjct 528 MNF-TFFKVNPDCLDPIFAVQAGDDTNTDQFLCSSFFDIKAVRNLDTDGLPY 578
>gi|494822885|ref|WP_007558293.1| hypothetical protein [Bacteroides plebeius]
gi|198272099|gb|EDY96368.1| putative capsid protein (F protein) [Bacteroides plebeius DSM
17135]
Length=613
Score = 116 bits (291), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 82/235 (35%), Positives = 124/235 (53%), Gaps = 24/235 (10%)
Query 3 SHRCQRVCGFDGSIDISAVENTNLSSDEAI-IRGKGIGGYRVNKPETFKTT-EHGVLMCI 60
S CQ + + + I+ V N N++ + A I GKG N F ++G++MC+
Sbjct 388 SDMCQWLGSINIDLSINEVVNNNITGENAADIAGKGT--MSGNGSINFNVGGQYGIVMCV 445
Query 61 YHAVPLLDYAPTGPDLQFMTTVDGD-SWPVPELDSVGFEELPSYSLLNTSDVQP------ 113
+H +P LDY + P F TT+ +P+PE D +G E++P LN V+P
Sbjct 446 FHVLPQLDYITSAP--HFGTTLTNVLDFPIPEFDKIGMEQVPVIRGLNP--VKPKDGDFK 501
Query 114 IKEPRPFGYVPRYISWKTSVDVVRGAFIDTLKSWTAPIGEDYMKI-----YFDNNNVPGG 168
+ FGY P+Y +WKT++D G F +LK+W P ++ + + DN NV
Sbjct 502 VSPNLYFGYAPQYYNWKTTLDKSMGEFRRSLKTWIIPFDDEALLAADSVDFPDNPNVEAD 561
Query 169 A-HFGFYTWFKVNPSVVNPIFGVVADGSWNTDQLLVNCDFDVRVARNLSYDGLPY 222
+ GF FKV+PSV++ +F V A+ NTDQ L + FDV V R+L +GLPY
Sbjct 562 SVKAGF---FKVSPSVLDNLFAVKANSDLNTDQFLCSTLFDVNVVRSLDPNGLPY 613
>gi|517172762|ref|WP_018361580.1| hypothetical protein [Prevotella nanceiensis]
Length=568
Score = 89.0 bits (219), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 66/233 (28%), Positives = 106/233 (45%), Gaps = 30/233 (13%)
Query 5 RCQRVCGFDGSIDISAVENTNLSSDEAIIRGKGIGGY--RVNKPET--------FKTTEH 54
RC + GFD +I + V ++ ++ + GGY R T F EH
Sbjct 348 RCTYIGGFDSNIQVGDVTQSSGTTVTGT-KDTSFGGYLGRTTGKATGSGSGHIRFDAKEH 406
Query 55 GVLMCIYHAVPLLDYAPTGPDLQFMTTVDGDSWPVPELDSVGFEEL----PSYSLLNTSD 110
G+LMCIY VP + Y D F+ ++ + VPE +++G + L SY N +
Sbjct 407 GILMCIYSLVPDVQYDSKRVD-PFVQKIERGDFFVPEFENLGMQPLFAKNISYKYNNNTA 465
Query 111 VQPIKEPRPFGYVPRYISWKTSVDVVRGAFI--DTLKSWTAPIGEDYMKIYFDNNNVPGG 168
IK FG+ PRY +KT++D+ G F+ + L WT F+
Sbjct 466 NSRIKNLGAFGWQPRYSEYKTALDINHGQFVHQEPLSYWTVARARGESMSNFN------- 518
Query 169 AHFGFYTWFKVNPSVVNPIFGVVADGSWNTDQLLVNCDFDVRVARNLSYDGLP 221
+ FK+NP ++ +F V +G+ TDQ+ C F++ ++S DG+P
Sbjct 519 -----ISTFKINPKWLDDVFAVNYNGTELTDQVFGGCYFNIVKVSDMSIDGMP 566
>gi|575094321|emb|CDL65708.1| unnamed protein product [uncultured bacterium]
Length=642
Score = 85.1 bits (209), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 68/229 (30%), Positives = 95/229 (41%), Gaps = 24/229 (10%)
Query 9 VCGFDGSIDISAVENTNLSSDEAIIRG---KGIGGYRVNKPETFKTTEHGVLMCIYHAVP 65
+ G I+I+ N NLS D G +G G + F +GV++ IY P
Sbjct 421 IGGSSSMININEQINQNLSGDNKATYGAAPQGNGSASI----KFTAKTYGVVIGIYRCTP 476
Query 66 LLDYAPTGPDLQFMTTVDGDSWPVPELDSVGFEEL------------PSYSLLNTSDVQP 113
+LD+A G D T D + +PE+DS+G ++ + D
Sbjct 477 VLDFAHLGIDRTLFKT-DASDFVIPEMDSIGMQQTFRCEVAAPAPYNDEFKAFRVGDGSS 535
Query 114 IKEPRPFGYVPRYISWKTSVDVVRGAFIDTLKSWTAPIGEDYMKIYFDNNNVPGGAHFGF 173
+GY PRY +KTS D GAF +LKSW I D ++ NN A
Sbjct 536 PDMSETYGYAPRYSEFKTSYDRYNGAFCHSLKSWVTGINFDAIQ----NNVWNTWAGINA 591
Query 174 YTWFKVNPSVVNPIFGVVADGSWNTDQLLVNCDFDVRVARNLSYDGLPY 222
F P +V +F V + + + DQL V RNLS GLPY
Sbjct 592 PNMFACRPDIVKNLFLVSSTNNSDDDQLYVGMVNMCYATRNLSRYGLPY 640
>gi|494306153|ref|WP_007173049.1| hypothetical protein [Prevotella bergensis]
gi|270333881|gb|EFA44667.1| putative capsid protein (F protein) [Prevotella bergensis DSM
17361]
Length=519
Score = 82.8 bits (203), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 67/232 (29%), Positives = 104/232 (45%), Gaps = 35/232 (15%)
Query 5 RCQRVCGFDGSIDISAVENTNLSSDEAI---------IRGKGIGGYRVNKPETFKTTEHG 55
R + GFD + +S V T+ ++ I GKG G R F EHG
Sbjct 306 RVNYLGGFDSDLQVSDVTQTSGTTATEYKPEAGYLGRIAGKGTGSGRGRI--VFDAKEHG 363
Query 56 VLMCIYHAVPLLDYAPTGPDLQFMTTVDGDSWPVPELDSVGFEELPSYSLLNTSDVQPIK 115
VLMCIY VP + Y T D + +D + PE +++G + LN+S +
Sbjct 364 VLMCIYSLVPQIQYDCTRLD-PMVDKLDRFDFFTPEFENLGMQP------LNSSYISSFC 416
Query 116 EPRP----FGYVPRYISWKTSVDVVRGAFI--DTLKSWTAPIGEDYMKIYFDNNNVPGGA 169
P P GY PRY +KT++D+ G F D L SW+ + F +
Sbjct 417 TPDPKNPVLGYQPRYSEYKTALDINHGQFAQNDALSSWSVSRFRRWTT--FPQLEIAD-- 472
Query 170 HFGFYTWFKVNPSVVNPIFGVVADGSWNTDQLLVNCDFDVRVARNLSYDGLP 221
FK++P +N +F V +G+ +TD + C+F++ ++S DG+P
Sbjct 473 -------FKIDPGCLNSVFPVEFNGTESTDCVFGGCNFNIVKVSDMSVDGMP 517
>gi|565841287|ref|WP_023924568.1| hypothetical protein [Prevotella nigrescens]
gi|564729907|gb|ETD29851.1| hypothetical protein HMPREF1173_00033 [Prevotella nigrescens
CC14M]
Length=656
Score = 82.4 bits (202), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 64/220 (29%), Positives = 101/220 (46%), Gaps = 28/220 (13%)
Query 9 VCGFDGSIDISAVENTNLSSDEAI---------IRGKGIGGYRVNKPETFKTTEHGVLMC 59
+ GFD I IS V T+ S + + GKGIG ++ EHG++MC
Sbjct 440 IGGFDNQISISEVVTTSNGSVDGTASTGSVVGQVFGKGIGAMNSGHI-SYDVKEHGLIMC 498
Query 60 IYHAVPLLDYAPTGPDLQFMTTVDGDSWPVPELDSVGFEELPSYSL---LNTSDVQPIKE 116
IY P +DY D F + + PE +++G + + L +N++ +
Sbjct 499 IYSIAPQVDYDARELD-PFNRKFSREDYFQPEFENLGMQPVIQSDLCLCINSAKSDSSDQ 557
Query 117 PRP-FGYVPRYISWKTSVDVVRGAFID--TLKSWTAPIGEDYMKIYFDNNNVPGGAHFGF 173
GY RY+ +KT+ D++ G F+ +L +W P ++ F ++P
Sbjct 558 HNNVLGYSARYLEYKTARDIIFGEFMSGGSLSAWATP--KNNYTFEFGKLSLPD------ 609
Query 174 YTWFKVNPSVVNPIFGVVADGSWNTDQLLVNCDFDVRVAR 213
V+P V+ PIF V +GS +TDQ LVN FDV+ R
Sbjct 610 ---LLVDPKVLEPIFAVKYNGSMSTDQFLVNSYFDVKAIR 646
>gi|494308783|ref|WP_007173938.1| hypothetical protein [Prevotella bergensis]
gi|270333035|gb|EFA43821.1| putative capsid protein (F protein) [Prevotella bergensis DSM
17361]
Length=553
Score = 79.7 bits (195), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 67/228 (29%), Positives = 102/228 (45%), Gaps = 27/228 (12%)
Query 5 RCQRVCGFDGSIDISAVENTNLSSDEAI---------IRGKGIGGYRVNKPETFKTTEHG 55
R + GFD + +S V T+ ++ + GKG G R F EHG
Sbjct 340 RVNYLGGFDSDMQVSDVTQTSGTTATEYKPEAGYLGRVAGKGTGSGR--GRIVFDAKEHG 397
Query 56 VLMCIYHAVPLLDYAPTGPDLQFMTTVDGDSWPVPELDSVGFEELPSYSLLNTSDVQPIK 115
VLMCIY VP + Y T D + +D + PE +++G + L S + + P K
Sbjct 398 VLMCIYSLVPQIQYDCTRLD-PMVDKLDRFDYFTPEFENLGMQPLNSSYISSFCTTDP-K 455
Query 116 EPRPFGYVPRYISWKTSVDVVRGAFI--DTLKSWTAPIGEDYMKIYFDNNNVPGGAHFGF 173
P GY PRY +KT++DV G F D L SW+ + F +
Sbjct 456 NP-VLGYQPRYSEYKTALDVNHGQFAQSDALSSWSVSRFRRWTT--FPQLEIAD------ 506
Query 174 YTWFKVNPSVVNPIFGVVADGSWNTDQLLVNCDFDVRVARNLSYDGLP 221
FK++P +N IF V +G+ D + C+F++ ++S DG+P
Sbjct 507 ---FKIDPGCLNSIFPVDYNGTEANDCVYGGCNFNIVKVSDMSVDGMP 551
Lambda K H a alpha
0.320 0.140 0.447 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 848296716240