bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: Microviridae_proteins.fasta
575 sequences; 147,441 total letters
Query= Contig-8_CDS_annotation_glimmer3.pl_2_1
Length=102
Score E
Sequences producing significant alignments: (Bits) Value
Alpavirinae_Human_gut_30_040_Microviridae_AG0137_hypothetical.p... 122 1e-38
Pichovirinae_59_Coral_002_Microviridae_AG0339_putative.VP1 21.2 3.2
Gokush_Human_feces_D_014_Microviridae_AG027_putative.VP2 20.4 4.8
Microvirus_gi|9626381|ref|NP_040711.1|_capsid_protein_[Enteroba... 20.4 5.9
Alpavirinae_Human_gut_31_037_Microviridae_AG0296_hypothetical.p... 19.2 8.2
Microvirus_gi|89888099|ref|YP_512793.1|_gpD_[Enterobacteria_pha... 19.6 8.9
> Alpavirinae_Human_gut_30_040_Microviridae_AG0137_hypothetical.protein
Length=102
Score = 122 bits (307), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 58/102 (57%), Positives = 74/102 (73%), Gaps = 0/102 (0%)
Query 1 MNTLMLLKHFEKRIVSAQHFKSEDEAIHWWARFPTSDEWEIIYLSERKRSGHRYALTYAK 60
M L+LLKH E + + A +FK+E +A WW F + EW II+ ER++SGHRY L Y++
Sbjct 1 MKKLLLLKHTEMKFIMAMYFKNEKQAYDWWFNFSAASEWVIIHEGEREKSGHRYELIYSQ 60
Query 61 CDERGILYSKYIICFSKKEAVLLARKIKEANSNYITNIKKLY 102
DE+G YSKYIICFSKKE V+L +KIK+ N NYI NIKKLY
Sbjct 61 LDEQGKPYSKYIICFSKKETVILGQKIKKENPNYIINIKKLY 102
> Pichovirinae_59_Coral_002_Microviridae_AG0339_putative.VP1
Length=522
Score = 21.2 bits (43), Expect = 3.2, Method: Composition-based stats.
Identities = 8/25 (32%), Positives = 13/25 (52%), Gaps = 0/25 (0%)
Query 18 QHFKSEDEAIHWWARFPTSDEWEII 42
+HFK D+ ++W F E I+
Sbjct 396 KHFKKLDKFDYYWPSFANIGEQPIL 420
> Gokush_Human_feces_D_014_Microviridae_AG027_putative.VP2
Length=275
Score = 20.4 bits (41), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 5/13 (38%), Positives = 8/13 (62%), Gaps = 0/13 (0%)
Query 31 ARFPTSDEWEIIY 43
A +P+ D W + Y
Sbjct 15 ANYPSKDNWNVQY 27
> Microvirus_gi|9626381|ref|NP_040711.1|_capsid_protein_[Enterobacteria_phage_phiX174_sensu_lato]
Length=427
Score = 20.4 bits (41), Expect = 5.9, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 17/37 (46%), Gaps = 6/37 (16%)
Query 32 RFPTSDEWEIIYLSERKRSGHRYALTYAKCDERGILY 68
RFP + EI YL+ + ALTY +LY
Sbjct 291 RFPPTATKEIQYLNAKG------ALTYTDIAGDPVLY 321
> Alpavirinae_Human_gut_31_037_Microviridae_AG0296_hypothetical.protein
Length=79
Score = 19.2 bits (38), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 7/13 (54%), Positives = 10/13 (77%), Gaps = 0/13 (0%)
Query 14 IVSAQHFKSEDEA 26
+ + +HFKS DEA
Sbjct 32 LATPEHFKSYDEA 44
> Microvirus_gi|89888099|ref|YP_512793.1|_gpD_[Enterobacteria_phage_ID18_sensu_lato]
Length=153
Score = 19.6 bits (39), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 9/34 (26%), Positives = 20/34 (59%), Gaps = 0/34 (0%)
Query 40 EIIYLSERKRSGHRYALTYAKCDERGILYSKYII 73
E+ + R R+G+ +TYA+ + R L ++ ++
Sbjct 118 ELFAFTLRVRAGNTELITYAENNAREKLRAQGVM 151
Lambda K H a alpha
0.322 0.134 0.410 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 5159970