bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: Microviridae_proteins.fasta
575 sequences; 147,441 total letters
Query= Contig-6_CDS_annotation_glimmer3.pl_2_4
Length=68
Score E
Sequences producing significant alignments: (Bits) Value
Microvirus_gi|89888655|ref|YP_512416.1|_gpF_[Enterobacteria_pha... 19.6 5.1
Alpavirinae_Human_feces_B_020_Microviridae_AG0351_putative.VP1 18.9 8.4
> Microvirus_gi|89888655|ref|YP_512416.1|_gpF_[Enterobacteria_phage_WA13_sensu_lato]
Length=427
Score = 19.6 bits (39), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 7/17 (41%), Positives = 10/17 (59%), Gaps = 0/17 (0%)
Query 45 YGSSQETFLVQHIDSAP 61
YG F+ Q +D+AP
Sbjct 78 YGEQWIDFMKQGVDAAP 94
> Alpavirinae_Human_feces_B_020_Microviridae_AG0351_putative.VP1
Length=651
Score = 18.9 bits (37), Expect = 8.4, Method: Composition-based stats.
Identities = 7/12 (58%), Positives = 9/12 (75%), Gaps = 0/12 (0%)
Query 45 YGSSQETFLVQH 56
Y +QET LV+H
Sbjct 543 YTGAQETNLVKH 554
Lambda K H a alpha
0.321 0.135 0.373 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 3625464