bitscore colors: <40, 40-50 , 50-80, 80-200, >200

           BLASTP 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: Microviridae_proteins.fasta
           575 sequences; 147,441 total letters





Query= Contig-4_CDS_annotation_glimmer3.pl_2_9

Length=196
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Alpavirinae_Human_feces_A_034_Microviridae_AG0102_putative.VP4      22.7    2.6
  Alpavirinae_Human_feces_B_021_Microviridae_AG0368_putative.VP1      22.3    3.3
  Alpavirinae_Human_feces_C_043_Microviridae_AG0322_putative.VP1      21.9    4.7
  Gokush_Bourget_052_Microviridae_AG0192_putative.DNA.binding.pro...  20.4    7.0  


> Alpavirinae_Human_feces_A_034_Microviridae_AG0102_putative.VP4
Length=539

 Score = 22.7 bits (47),  Expect = 2.6, Method: Compositional matrix adjust.
 Identities = 21/98 (21%), Positives = 39/98 (40%), Gaps = 18/98 (18%)

Query  108  GLLYLMECLIFRIKNLSDMFPPGRISIDYSP----------DLPTMMVLFYEGLLKYMKL  157
            G +    CL    KN   + P GR S++++           +   +  LFY+G +  +  
Sbjct  242  GYVNSTACLPDFFKNSRHIKPFGRFSVNFAESAFNEVFKPEENEEIFSLFYDGRVLNL--  299

Query  158  CNAYYDSLPE-TSPLRKQLREMYPNLYVGGVSTISDEV  194
                 +  P    P R  +  +YP L     +T+ D++
Sbjct  300  -----NGKPTIVRPKRSHINRLYPRLDKSKHATVVDDI  332


> Alpavirinae_Human_feces_B_021_Microviridae_AG0368_putative.VP1
Length=649

 Score = 22.3 bits (46),  Expect = 3.3, Method: Composition-based stats.
 Identities = 10/22 (45%), Positives = 16/22 (73%), Gaps = 1/22 (5%)

Query  122  NLSDM-FPPGRISIDYSPDLPT  142
            N+SD+  P  ++SI+ + DLPT
Sbjct  108  NMSDIKLPQIKVSINKTIDLPT  129


> Alpavirinae_Human_feces_C_043_Microviridae_AG0322_putative.VP1
Length=602

 Score = 21.9 bits (45),  Expect = 4.7, Method: Composition-based stats.
 Identities = 8/16 (50%), Positives = 11/16 (69%), Gaps = 0/16 (0%)

Query  151  LLKYMKLCNAYYDSLP  166
            LL+Y++  N YY S P
Sbjct  151  LLRYLRYGNCYYTSDP  166


> Gokush_Bourget_052_Microviridae_AG0192_putative.DNA.binding.protein
Length=71

 Score = 20.4 bits (41),  Expect = 7.0, Method: Compositional matrix adjust.
 Identities = 9/24 (38%), Positives = 17/24 (71%), Gaps = 3/24 (13%)

Query  58  LTVMLQTIS---IALYLFPLFIKP  78
           +TV++ T S   ++L+L  +F+KP
Sbjct  10  VTVLIDTFSCFHVSLFLLEIFMKP  33



Lambda      K        H        a         alpha
   0.328    0.143    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 14604612