bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: Microviridae_proteins.fasta
575 sequences; 147,441 total letters
Query= Contig-4_CDS_annotation_glimmer3.pl_2_6
Length=57
Score E
Sequences producing significant alignments: (Bits) Value
Pichovirinae_Pavin_279_Microviridae_AG0271_putative.VP1 19.2 3.7
Gokush_gi|9629147|ref|NP_044316.1|_structural_protein_[Chlamydi... 18.9 4.7
Pichovirinae_JCVI_003_Microviridae_AG0343_putative.VP4 18.9 6.2
Alpavirinae_Human_feces_E_011_Microviridae_AG0385_putative.VP4 18.5 7.0
Gokush_gi|9629145|ref|NP_044314.1|_VP2_[Chlamydia_phage_1] 18.5 7.2
Gokush_gi|9629146|ref|NP_044315.1|_structural_protein_[Chlamydi... 18.5 7.4
Alpavirinae_Human_feces_B_020_Microviridae_AG0351_putative.VP1 18.5 8.4
Gokush_Bourget_052_Microviridae_AG0193_putative.VP1 18.5 9.3
> Pichovirinae_Pavin_279_Microviridae_AG0271_putative.VP1
Length=503
Score = 19.2 bits (38), Expect = 3.7, Method: Composition-based stats.
Identities = 8/20 (40%), Positives = 13/20 (65%), Gaps = 0/20 (0%)
Query 5 SVKEYWYLVRCHSIGREPEY 24
SV+E+ Y++ SI +P Y
Sbjct 352 SVEEHGYIIGIMSIMPKPAY 371
> Gokush_gi|9629147|ref|NP_044316.1|_structural_protein_[Chlamydia_phage_1]
Length=169
Score = 18.9 bits (37), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 6/11 (55%), Positives = 8/11 (73%), Gaps = 0/11 (0%)
Query 10 WYLVRCHSIGR 20
+YL R H +GR
Sbjct 114 FYLFRKHPVGR 124
> Pichovirinae_JCVI_003_Microviridae_AG0343_putative.VP4
Length=275
Score = 18.9 bits (37), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 9/26 (35%), Positives = 15/26 (58%), Gaps = 2/26 (8%)
Query 20 REPEYDLVLKTRSDMKKYVIELRKEW 45
R+PE+ L+ K K+Y+ + K W
Sbjct 175 RQPEFSLMSKGLG--KRYLTDQMKNW 198
> Alpavirinae_Human_feces_E_011_Microviridae_AG0385_putative.VP4
Length=611
Score = 18.5 bits (36), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 7/18 (39%), Positives = 13/18 (72%), Gaps = 3/18 (17%)
Query 40 ELRKEWSFVDAGRVDFSI 57
++ K WS+ GR+D+S+
Sbjct 265 DISKAWSY---GRIDYSL 279
> Gokush_gi|9629145|ref|NP_044314.1|_VP2_[Chlamydia_phage_1]
Length=263
Score = 18.5 bits (36), Expect = 7.2, Method: Composition-based stats.
Identities = 6/11 (55%), Positives = 8/11 (73%), Gaps = 0/11 (0%)
Query 10 WYLVRCHSIGR 20
+YL R H +GR
Sbjct 208 FYLFRKHPVGR 218
> Gokush_gi|9629146|ref|NP_044315.1|_structural_protein_[Chlamydia_phage_1]
Length=175
Score = 18.5 bits (36), Expect = 7.4, Method: Composition-based stats.
Identities = 6/11 (55%), Positives = 8/11 (73%), Gaps = 0/11 (0%)
Query 10 WYLVRCHSIGR 20
+YL R H +GR
Sbjct 120 FYLFRKHPVGR 130
> Alpavirinae_Human_feces_B_020_Microviridae_AG0351_putative.VP1
Length=651
Score = 18.5 bits (36), Expect = 8.4, Method: Composition-based stats.
Identities = 10/28 (36%), Positives = 14/28 (50%), Gaps = 6/28 (21%)
Query 22 PEYDLVLKTRSDMKKYVIELRKEWSFVD 49
P+Y L+LKT Y +L + W D
Sbjct 349 PQYGLLLKT------YNSDLYQNWINTD 370
> Gokush_Bourget_052_Microviridae_AG0193_putative.VP1
Length=528
Score = 18.5 bits (36), Expect = 9.3, Method: Composition-based stats.
Identities = 11/29 (38%), Positives = 16/29 (55%), Gaps = 3/29 (10%)
Query 27 VLKTRSDMKKYVIELRKEWSFVDAGRVDF 55
++ R+D+ Y LRK WS + R DF
Sbjct 378 LISVRADLT-YQQGLRKMWS--RSTRYDF 403
Lambda K H a alpha
0.322 0.137 0.424 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 3661448