bitscore colors: <40, 40-50 , 50-80, 80-200, >200

           BLASTP 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: Microviridae_proteins.fasta
           575 sequences; 147,441 total letters





Query= Contig-36_CDS_annotation_glimmer3.pl_2_4

Length=92
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Pichovirinae_Pavin_723_Microviridae_AG0327_putative.VP1             25.8    0.066
  Pichovirinae_Pavin_279_Microviridae_AG0271_putative.VP1             23.1    0.55
  Pichovirinae_Bourget_523_Microviridae_AG0333_putative.VP1           20.4    4.9
  Pichovirinae_JCVI_003_Microviridae_AG0344_putative.VP1              20.0    6.2
  Gokush_gi|393707864|ref|YP_004732986.1|_viral_coat_protein_VP1_...  19.2    9.7


> Pichovirinae_Pavin_723_Microviridae_AG0327_putative.VP1
Length=508

 Score = 25.8 bits (55),  Expect = 0.066, Method: Composition-based stats.
 Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (3%)

Query  46   NTDVAPAE-YQCVKKRKLENGYFYASVRLMHDGYAIDAEI  84
            NTD    E    +++R  E+ YF AS+     G A+D  I
Sbjct  170  NTDAGDRERLTTLRQRAWEHDYFTASLPFAQKGAAVDIPI  209


> Pichovirinae_Pavin_279_Microviridae_AG0271_putative.VP1
Length=503

 Score = 23.1 bits (48),  Expect = 0.55, Method: Composition-based stats.
 Identities = 10/45 (22%), Positives = 21/45 (47%), Gaps = 0/45 (0%)

Query  37   ISRAKETVANTDVAPAEYQCVKKRKLENGYFYASVRLMHDGYAID  81
            ++     +A+ +     +  ++KR  E+ YF A +     G A+D
Sbjct  154  VTAVNYNLADGNQGIGTFGTLRKRAYEHDYFTACLPFAQKGAAVD  198


> Pichovirinae_Bourget_523_Microviridae_AG0333_putative.VP1
Length=518

 Score = 20.4 bits (41),  Expect = 4.9, Method: Composition-based stats.
 Identities = 14/61 (23%), Positives = 24/61 (39%), Gaps = 5/61 (8%)

Query  31   PMLKSAISRAKETVANTDVAPAEYQCVKKRKLENGYFYASVRLMHDGYAIDAEIWKTQVH  90
            P+L S      +   N    P     VKKR  ++ YF + +     G A+   I    ++
Sbjct  168  PVLDSLTDGENDPFRNLAAGP-----VKKRAWQHDYFTSCLPWAQKGDAVTIPIGDVTIN  222

Query  91   H  91
            +
Sbjct  223  Y  223


> Pichovirinae_JCVI_003_Microviridae_AG0344_putative.VP1
Length=505

 Score = 20.0 bits (40),  Expect = 6.2, Method: Composition-based stats.
 Identities = 7/25 (28%), Positives = 14/25 (56%), Gaps = 0/25 (0%)

Query  57   VKKRKLENGYFYASVRLMHDGYAID  81
            ++ R  E+ YF +++     G A+D
Sbjct  176  MRLRAFEHDYFTSALPFAQKGNAVD  200


> Gokush_gi|393707864|ref|YP_004732986.1|_viral_coat_protein_VP1_[Microviridae_phi-CA82]
Length=565

 Score = 19.2 bits (38),  Expect = 9.7, Method: Composition-based stats.
 Identities = 6/13 (46%), Positives = 10/13 (77%), Gaps = 0/13 (0%)

Query  66  YFYASVRLMHDGY  78
           +FYA  R++ DG+
Sbjct  53  WFYAPNRILWDGW  65



Lambda      K        H        a         alpha
   0.317    0.129    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 4285192