bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: Microviridae_proteins.fasta
575 sequences; 147,441 total letters
Query= Contig-25_CDS_annotation_glimmer3.pl_2_5
Length=92
Score E
Sequences producing significant alignments: (Bits) Value
Microvirus_gi|9626346|ref|NP_040678.1|_major_coat_protein_[Ente... 24.6 0.13
Microvirus_gi|89888616|ref|YP_512376.1|_gpF_[Enterobacteria_pha... 24.3 0.21
Microvirus_gi|89888655|ref|YP_512416.1|_gpF_[Enterobacteria_pha... 21.9 1.5
Microvirus_gi|89888103|ref|YP_512796.1|_gpF_[Enterobacteria_pha... 20.4 4.6
Gokush_Bourget_052_Microviridae_AG0193_putative.VP1 20.0 6.2
Alpavirinae_Human_gut_30_017_Microviridae_AG0205_putative.VP1 19.6 7.4
Gokush_Human_feces_B_029_Microviridae_AG0419_putative.VP5 19.2 8.3
> Microvirus_gi|9626346|ref|NP_040678.1|_major_coat_protein_[Enterobacteria_phage_G4_sensu_lato]
Length=427
Score = 24.6 bits (52), Expect = 0.13, Method: Composition-based stats.
Identities = 14/37 (38%), Positives = 18/37 (49%), Gaps = 0/37 (0%)
Query 54 QVATVSSDVDGFPIVEALPRPRLALRVSALMNVGDSV 90
+VA + +DGFP ALP L RV N D +
Sbjct 358 RVAFPYNALDGFPFYSALPSTELKDRVLVNTNNYDEI 394
> Microvirus_gi|89888616|ref|YP_512376.1|_gpF_[Enterobacteria_phage_ID2_Moscow/ID/2001]
Length=427
Score = 24.3 bits (51), Expect = 0.21, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 15/27 (56%), Gaps = 0/27 (0%)
Query 54 QVATVSSDVDGFPIVEALPRPRLALRV 80
+VA + +DGFP ALP L RV
Sbjct 358 RVAFPYNALDGFPFYSALPSTDLKQRV 384
> Microvirus_gi|89888655|ref|YP_512416.1|_gpF_[Enterobacteria_phage_WA13_sensu_lato]
Length=427
Score = 21.9 bits (45), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 15/27 (56%), Gaps = 0/27 (0%)
Query 54 QVATVSSDVDGFPIVEALPRPRLALRV 80
+VA + +DGFP A+P + RV
Sbjct 358 RVALPYNYLDGFPFYSAIPSDDIKQRV 384
> Microvirus_gi|89888103|ref|YP_512796.1|_gpF_[Enterobacteria_phage_ID18_sensu_lato]
Length=426
Score = 20.4 bits (41), Expect = 4.6, Method: Composition-based stats.
Identities = 10/27 (37%), Positives = 14/27 (52%), Gaps = 0/27 (0%)
Query 54 QVATVSSDVDGFPIVEALPRPRLALRV 80
+VA + +DGFP LP + RV
Sbjct 357 RVAFPYNALDGFPFYSELPSNDILERV 383
> Gokush_Bourget_052_Microviridae_AG0193_putative.VP1
Length=528
Score = 20.0 bits (40), Expect = 6.2, Method: Composition-based stats.
Identities = 7/19 (37%), Positives = 11/19 (58%), Gaps = 0/19 (0%)
Query 49 DSVVYQVATVSSDVDGFPI 67
DS+ Y + S V G+P+
Sbjct 105 DSISYTIPQQVSPVGGYPV 123
> Alpavirinae_Human_gut_30_017_Microviridae_AG0205_putative.VP1
Length=647
Score = 19.6 bits (39), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 7/12 (58%), Positives = 9/12 (75%), Gaps = 0/12 (0%)
Query 8 RDEVSYETGDLF 19
RDE+S+ DLF
Sbjct 264 RDELSWNRSDLF 275
> Gokush_Human_feces_B_029_Microviridae_AG0419_putative.VP5
Length=80
Score = 19.2 bits (38), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 9/25 (36%), Positives = 13/25 (52%), Gaps = 0/25 (0%)
Query 1 MQNMYVIRDEVSYETGDLFCLANDA 25
++ Y I D+V+ LF NDA
Sbjct 2 LKRYYAIYDKVAKSCSGLFEQQNDA 26
Lambda K H a alpha
0.320 0.135 0.374 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 4285192