bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: Microviridae_proteins.fasta
575 sequences; 147,441 total letters
Query= Contig-14_CDS_annotation_glimmer3.pl_2_1
Length=69
Score E
Sequences producing significant alignments: (Bits) Value
Alpavirinae_Human_feces_A_034_Microviridae_AG0104_hypothetical.... 64.7 6e-17
Alpavirinae_Human_gut_33_005_Microviridae_AG0180_putative.VP4 22.7 0.33
Alpavirinae_Human_gut_30_040_Microviridae_AG0134_putative.VP1 21.6 1.1
Pichovirinae_JCVI_003_Microviridae_AG0346_hypothetical.protein.... 21.2 1.3
Alpavirinae_Human_gut_24_085_Microviridae_AG0227_putative.VP4 20.8 1.8
Alpavirinae_Human_gut_32_015_Microviridae_AG0214_putative.VP4 20.4 2.5
Microvirus_gi|89888096|ref|YP_512789.1|_gpA*_[Enterobacteria_ph... 20.0 3.2
Microvirus_gi|89888095|ref|YP_512788.1|_gpA_[Enterobacteria_pha... 19.6 4.6
Pichovirinae_Bourget_523_Microviridae_AG0335_putative.VP4 19.2 6.1
Microvirus_gi|9626378|ref|NP_040708.1|_external_scaffolding_pro... 18.9 7.3
> Alpavirinae_Human_feces_A_034_Microviridae_AG0104_hypothetical.protein
Length=69
Score = 64.7 bits (156), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 45/63 (71%), Gaps = 0/63 (0%)
Query 5 IDIETFPTIHNDIVDGIPESYVHYFKQYLYEIEDRRISQNTDVSVRPLDALSETGIIQLK 64
+++++FP+I+NDIVDGIPE+YVHY+K+YLYE+E R+ ++ + +R D QL
Sbjct 2 LNVDSFPSIYNDIVDGIPENYVHYYKKYLYEVEFIRLKESISIPLRHCDIPVAEKEKQLV 61
Query 65 FNF 67
NF
Sbjct 62 INF 64
> Alpavirinae_Human_gut_33_005_Microviridae_AG0180_putative.VP4
Length=536
Score = 22.7 bits (47), Expect = 0.33, Method: Composition-based stats.
Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 0/37 (0%)
Query 33 LYEIEDRRISQNTDVSVRPLDALSETGIIQLKFNFID 69
LY + DR + D +VR +S+ + KF F+D
Sbjct 315 LYPVLDRSAVSDVDSNVRTALFVSKIPQVLAKFGFLD 351
> Alpavirinae_Human_gut_30_040_Microviridae_AG0134_putative.VP1
Length=679
Score = 21.6 bits (44), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 0/33 (0%)
Query 28 YFKQYLYEIEDRRISQNTDVSVRPLDALSETGI 60
Y EIE + + N+ +PL AL+ G+
Sbjct 483 YLGGSSLEIEFQEVINNSGTEDQPLGALAGRGV 515
> Pichovirinae_JCVI_003_Microviridae_AG0346_hypothetical.protein.BACEGG.02723
Length=252
Score = 21.2 bits (43), Expect = 1.3, Method: Composition-based stats.
Identities = 10/28 (36%), Positives = 16/28 (57%), Gaps = 0/28 (0%)
Query 30 KQYLYEIEDRRISQNTDVSVRPLDALSE 57
K Y + D + + TDV ++ +DAL E
Sbjct 185 KTYSSILNDVKSREMTDVQIKQIDALIE 212
> Alpavirinae_Human_gut_24_085_Microviridae_AG0227_putative.VP4
Length=489
Score = 20.8 bits (42), Expect = 1.8, Method: Composition-based stats.
Identities = 8/24 (33%), Positives = 14/24 (58%), Gaps = 0/24 (0%)
Query 16 DIVDGIPESYVHYFKQYLYEIEDR 39
+ +DG + Y+K+ LY E+R
Sbjct 224 EYLDGRETYLIKYYKEKLYTTEER 247
> Alpavirinae_Human_gut_32_015_Microviridae_AG0214_putative.VP4
Length=489
Score = 20.4 bits (41), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 8/22 (36%), Positives = 13/22 (59%), Gaps = 0/22 (0%)
Query 18 VDGIPESYVHYFKQYLYEIEDR 39
+DG + Y+K+ LY E+R
Sbjct 226 LDGRETYLIKYYKEKLYTAEER 247
> Microvirus_gi|89888096|ref|YP_512789.1|_gpA*_[Enterobacteria_phage_ID18_sensu_lato]
Length=341
Score = 20.0 bits (40), Expect = 3.2, Method: Composition-based stats.
Identities = 8/24 (33%), Positives = 15/24 (63%), Gaps = 0/24 (0%)
Query 40 RISQNTDVSVRPLDALSETGIIQL 63
R+S+N + + P+ L+ +IQL
Sbjct 213 RMSRNFGMKLLPMTTLTAECLIQL 236
> Microvirus_gi|89888095|ref|YP_512788.1|_gpA_[Enterobacteria_phage_ID18_sensu_lato]
Length=556
Score = 19.6 bits (39), Expect = 4.6, Method: Composition-based stats.
Identities = 8/24 (33%), Positives = 15/24 (63%), Gaps = 0/24 (0%)
Query 40 RISQNTDVSVRPLDALSETGIIQL 63
R+S+N + + P+ L+ +IQL
Sbjct 428 RMSRNFGMKLLPMTTLTAECLIQL 451
> Pichovirinae_Bourget_523_Microviridae_AG0335_putative.VP4
Length=291
Score = 19.2 bits (38), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 8/23 (35%), Positives = 14/23 (61%), Gaps = 0/23 (0%)
Query 19 DGIPESYVHYFKQYLYEIEDRRI 41
DG S YF++ ++ ++RRI
Sbjct 213 DGKKISLPRYFREKIWTEQERRI 235
> Microvirus_gi|9626378|ref|NP_040708.1|_external_scaffolding_protein_[Enterobacteria_phage_phiX174_sensu_lato]
Length=152
Score = 18.9 bits (37), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 14/22 (64%), Gaps = 0/22 (0%)
Query 41 ISQNTDVSVRPLDALSETGIIQ 62
+SQ T+ SVR AL+ +IQ
Sbjct 1 MSQVTEQSVRFQTALASIKLIQ 22
Lambda K H a alpha
0.322 0.142 0.411 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 3608789