bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: Microviridae_proteins.fasta
575 sequences; 147,441 total letters
Query= Contig-10_CDS_annotation_glimmer3.pl_2_7
Length=84
Score E
Sequences producing significant alignments: (Bits) Value
Alpavirinae_Human_feces_C_043_Microviridae_AG0321_putative.VP4 26.9 0.020
Alpavirinae_Human_feces_D_031_Microviridae_AG0423_putative.VP4 25.0 0.098
Alpavirinae_Human_feces_D_008_Microviridae_AG0100_putative.VP4 22.7 0.52
Alpavirinae_Human_gut_33_017_Microviridae_AG0152_putative.VP4 22.7 0.53
Alpavirinae_Human_gut_22_017_Microviridae_AG0393_putative.VP4 22.3 0.91
Alpavirinae_Human_feces_A_021_Microviridae_AG075_putative.VP4 21.6 1.4
Alpavirinae_Human_feces_B_039_Microviridae_AG093_putative.VP4 21.2 2.0
Gokush_gi|77020121|ref|YP_338244.1|_putative_replication_protei... 21.2 2.1
Gokush_Human_gut_37_015_Microviridae_AG031_putative.VP4 20.4 3.8
Gokush_Human_gut_36_019_Microviridae_AG0277_putative.VP4 20.4 3.8
> Alpavirinae_Human_feces_C_043_Microviridae_AG0321_putative.VP4
Length=546
Score = 26.9 bits (58), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 10/14 (71%), Positives = 13/14 (93%), Gaps = 0/14 (0%)
Query 71 VKHREINERNLKYV 84
+KHREIN+ NL+YV
Sbjct 513 IKHREINDLNLQYV 526
> Alpavirinae_Human_feces_D_031_Microviridae_AG0423_putative.VP4
Length=532
Score = 25.0 bits (53), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 15/22 (68%), Gaps = 0/22 (0%)
Query 57 SLAQAKAKTDCDNRVKHREINE 78
SL + K ++ R+KHREIN+
Sbjct 495 SLCRDKLHSEIRKRIKHREIND 516
> Alpavirinae_Human_feces_D_008_Microviridae_AG0100_putative.VP4
Length=532
Score = 22.7 bits (47), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 9/22 (41%), Positives = 14/22 (64%), Gaps = 0/22 (0%)
Query 57 SLAQAKAKTDCDNRVKHREINE 78
+L + K + R+KHREIN+
Sbjct 495 NLCRDKLHNEIRKRIKHREIND 516
> Alpavirinae_Human_gut_33_017_Microviridae_AG0152_putative.VP4
Length=565
Score = 22.7 bits (47), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 8/25 (32%), Positives = 16/25 (64%), Gaps = 0/25 (0%)
Query 54 PILSLAQAKAKTDCDNRVKHREINE 78
P++ A + C ++VKH++IN+
Sbjct 532 PLVRRLAAASLMKCRDKVKHKKIND 556
> Alpavirinae_Human_gut_22_017_Microviridae_AG0393_putative.VP4
Length=562
Score = 22.3 bits (46), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 7/25 (28%), Positives = 16/25 (64%), Gaps = 0/25 (0%)
Query 54 PILSLAQAKAKTDCDNRVKHREINE 78
P++ A + C ++VKH+++N+
Sbjct 532 PLVRRLAAASLMKCRDKVKHKKVND 556
> Alpavirinae_Human_feces_A_021_Microviridae_AG075_putative.VP4
Length=547
Score = 21.6 bits (44), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 8/37 (22%), Positives = 20/37 (54%), Gaps = 0/37 (0%)
Query 48 SLVKSHPILSLAQAKAKTDCDNRVKHREINERNLKYV 84
S +K++ ++ + N +KH+E+N+ N ++
Sbjct 509 STIKTNRLVQAVDEECHCRIQNSIKHKELNDLNYCFL 545
> Alpavirinae_Human_feces_B_039_Microviridae_AG093_putative.VP4
Length=559
Score = 21.2 bits (43), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 7/26 (27%), Positives = 16/26 (62%), Gaps = 0/26 (0%)
Query 55 ILSLAQAKAKTDCDNRVKHREINERN 80
+L + ++ T C + +KH+ +N+ N
Sbjct 527 LLEQLRLRSATFCRDMIKHKRLNDAN 552
> Gokush_gi|77020121|ref|YP_338244.1|_putative_replication_protein_[Chlamydia_phage_4]
Length=315
Score = 21.2 bits (43), Expect = 2.1, Method: Composition-based stats.
Identities = 9/22 (41%), Positives = 14/22 (64%), Gaps = 0/22 (0%)
Query 41 EHHPPFESLVKSHPILSLAQAK 62
+H P SLV++HP L L + +
Sbjct 93 QHLPENGSLVRNHPTLFLRRLR 114
> Gokush_Human_gut_37_015_Microviridae_AG031_putative.VP4
Length=315
Score = 20.4 bits (41), Expect = 3.8, Method: Composition-based stats.
Identities = 7/10 (70%), Positives = 8/10 (80%), Gaps = 0/10 (0%)
Query 41 EHHPPFESLV 50
EH PPF SL+
Sbjct 80 EHLPPFGSLI 89
> Gokush_Human_gut_36_019_Microviridae_AG0277_putative.VP4
Length=315
Score = 20.4 bits (41), Expect = 3.8, Method: Composition-based stats.
Identities = 7/10 (70%), Positives = 8/10 (80%), Gaps = 0/10 (0%)
Query 41 EHHPPFESLV 50
EH PPF SL+
Sbjct 80 EHLPPFGSLI 89
Lambda K H a alpha
0.315 0.129 0.369 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 3625946