bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: all_orgs
14,240,465 sequences; 5,121,972,263 total letters
Query= Contig-6_CDS_annotation_glimmer3.pl_2_6
Length=94
Score E
Sequences producing significant alignments: (Bits) Value
ccm:Ccan_10850 ATP-dependent DNA helicase recQ (EC:5.99.1.3) 38.5 0.11
lgi:LOTGIDRAFT_160547 hypothetical protein 33.9 2.9
bvu:BVU_2198 hypothetical protein 33.5 3.8
bdh:GV66_11170 hypothetical protein 33.5 4.0
bdo:EL88_03595 hypothetical protein 33.5 4.1
plu:plu4620 recQ; ATP-dependent DNA helicase RecQ 33.1 6.8
> ccm:Ccan_10850 ATP-dependent DNA helicase recQ (EC:5.99.1.3)
Length=635
Score = 38.5 bits (88), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 0/62 (0%)
Query 29 LIGDDDLCTDQWENSYYPYFYYNVHTNEPFEKTPVYRLYASDVKKLFNDRIKHKKLNDAN 88
++ D+ C W + P + V E F K P+ L AS +++ ND ++ ++ND
Sbjct 135 IVIDEAHCISHWGKDFRPAYLECVWLKEEFPKIPILALTASATQRVQNDIVQLMQMNDVQ 194
Query 89 KI 90
I
Sbjct 195 VI 196
> lgi:LOTGIDRAFT_160547 hypothetical protein
Length=578
Score = 33.9 bits (76), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/65 (28%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
Query 17 FFESQQEFYE----SDLIGDDDLCTDQWENSYYPYFYYNVHTNEPFEKTPVYRLYASDVK 72
F + ++ YE S L+ D+ C QW + + P F Y + F P+ L A+
Sbjct 137 FLKELEKMYEMGRFSRLVIDEVHCCSQWGHDFRPGFRYLGIIKKQFPTVPILGLTATATL 196
Query 73 KLFND 77
K+ +D
Sbjct 197 KVLDD 201
> bvu:BVU_2198 hypothetical protein
Length=582
Score = 33.5 bits (75), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 25/55 (45%), Gaps = 9/55 (16%)
Query 38 DQWENSYYPYFYYNVHTNEPFEKT------PVYRLYASDVKKLFNDRIKHKKLND 86
D W+N Y YYNV EPF K P+ +LYA K+ I HK N
Sbjct 223 DLWQNPYAVSRYYNV---EPFSKKHFDLMRPLMKLYADAGGKVITASIMHKPWNG 274
> bdh:GV66_11170 hypothetical protein
Length=582
Score = 33.5 bits (75), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 25/55 (45%), Gaps = 9/55 (16%)
Query 38 DQWENSYYPYFYYNVHTNEPFEK------TPVYRLYASDVKKLFNDRIKHKKLND 86
D W+N Y YYNV EPF K P+ +LYA K+ I HK N
Sbjct 223 DLWQNPYAVSRYYNV---EPFSKEHFDLMRPLMKLYADAGGKVITASIMHKPWNG 274
> bdo:EL88_03595 hypothetical protein
Length=582
Score = 33.5 bits (75), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 25/55 (45%), Gaps = 9/55 (16%)
Query 38 DQWENSYYPYFYYNVHTNEPFEK------TPVYRLYASDVKKLFNDRIKHKKLND 86
D W+N Y YYNV EPF K P+ +LYA K+ I HK N
Sbjct 223 DLWQNPYAVSRYYNV---EPFSKEHFDLMRPLMKLYADAGGKVITASIMHKPWNG 274
> plu:plu4620 recQ; ATP-dependent DNA helicase RecQ
Length=608
Score = 33.1 bits (74), Expect = 6.8, Method: Composition-based stats.
Identities = 21/86 (24%), Positives = 37/86 (43%), Gaps = 0/86 (0%)
Query 1 MIEEFYSYLDYMHLTTFFESQQEFYESDLIGDDDLCTDQWENSYYPYFYYNVHTNEPFEK 60
MI+ Y + + + F E E+ + L D+ C QW + + P + + F
Sbjct 115 MIKLLYIAPERLMMDNFLEQLLEWQPAMLAVDEAHCISQWGHDFRPEYRALGQLRQRFPT 174
Query 61 TPVYRLYASDVKKLFNDRIKHKKLND 86
PV L A+ + ND ++ LN+
Sbjct 175 LPVIALTATADETTRNDIVRLLNLNN 200
Lambda K H a alpha
0.320 0.139 0.428 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 126317475090