bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: all_orgs
14,240,465 sequences; 5,121,972,263 total letters
Query= Contig-6_CDS_annotation_glimmer3.pl_2_4
Length=156
Score E
Sequences producing significant alignments: (Bits) Value
cqu:CpipJ_CPIJ006310 leucine-rich transmembrane protein 36.2 2.2
ahp:V429_03300 hypothetical protein 35.0 4.9
ahr:V428_03300 hypothetical protein 35.0 4.9
ahy:AHML_03145 hypothetical protein 35.0 4.9
aha:AHA_0614 hypothetical protein 35.0 5.2
> cqu:CpipJ_CPIJ006310 leucine-rich transmembrane protein
Length=1512
Score = 36.2 bits (82), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 62/124 (50%), Gaps = 8/124 (6%)
Query 17 SPVSAKDMLCSEFRQESPIDQFLFEE-FEFDGVKSVR-LTSDIYMLFNQQRLDRLSRESL 74
S S+ ++ C F S + FE+ +EFD +SV+ LT D++ NQQ D R
Sbjct 81 SSASSNEIECPSFVDNSACPCYKFEDVYEFD--RSVKSLTVDLFAPANQQSSDVNIRHLQ 138
Query 75 LSHFESMSVNEPKFGDLRAKLGDDQLISFVKSRFIQSPSELMAWSQYLMSSSDVVVAELA 134
S+ + E +LRA L + +S V + Q P++ +A + LM D + E++
Sbjct 139 FSNSNLQQLKENSLSNLRAHL---ESLSIVNGKLTQVPTKALAGLKKLM-VLDFELNEIS 194
Query 135 AVQQ 138
A+++
Sbjct 195 AIEE 198
> ahp:V429_03300 hypothetical protein
Length=731
Score = 35.0 bits (79), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 20/67 (30%), Positives = 33/67 (49%), Gaps = 2/67 (3%)
Query 37 QFLFEEFEFDGVKSVRLTSDIYMLFNQQRLDRLSRESLLSHFESMSVNEPKFGDLRAKLG 96
+L + +F G+K R + + +L+N L LSR +L S + + +FG L L
Sbjct 610 HWLLDNLKFPGIKEER--ALLGLLYNTPPLVNLSRSTLASRLPELVRLDSQFGPLHEALW 667
Query 97 DDQLISF 103
D L+ F
Sbjct 668 DKALVGF 674
> ahr:V428_03300 hypothetical protein
Length=731
Score = 35.0 bits (79), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 20/67 (30%), Positives = 33/67 (49%), Gaps = 2/67 (3%)
Query 37 QFLFEEFEFDGVKSVRLTSDIYMLFNQQRLDRLSRESLLSHFESMSVNEPKFGDLRAKLG 96
+L + +F G+K R + + +L+N L LSR +L S + + +FG L L
Sbjct 610 HWLLDNLKFPGIKEER--ALLGLLYNTPPLVNLSRSTLASRLPELVRLDSQFGPLHEALW 667
Query 97 DDQLISF 103
D L+ F
Sbjct 668 DKALVGF 674
> ahy:AHML_03145 hypothetical protein
Length=731
Score = 35.0 bits (79), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 20/67 (30%), Positives = 33/67 (49%), Gaps = 2/67 (3%)
Query 37 QFLFEEFEFDGVKSVRLTSDIYMLFNQQRLDRLSRESLLSHFESMSVNEPKFGDLRAKLG 96
+L + +F G+K R + + +L+N L LSR +L S + + +FG L L
Sbjct 610 HWLLDNLKFPGIKEER--ALLGLLYNTPPLVNLSRSTLASRLPELVRLDSQFGPLHEALW 667
Query 97 DDQLISF 103
D L+ F
Sbjct 668 DKALVGF 674
> aha:AHA_0614 hypothetical protein
Length=731
Score = 35.0 bits (79), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 20/67 (30%), Positives = 33/67 (49%), Gaps = 2/67 (3%)
Query 37 QFLFEEFEFDGVKSVRLTSDIYMLFNQQRLDRLSRESLLSHFESMSVNEPKFGDLRAKLG 96
+L + +F G+K R + + +L+N L LSR +L S + + +FG L L
Sbjct 610 HWLLDNLKFPGIKEER--ALLGLLYNTPPLVNLSRSTLASRLPELVRLDSQFGPLHEALW 667
Query 97 DDQLISF 103
D L+ F
Sbjct 668 DKALVGF 674
Lambda K H a alpha
0.315 0.127 0.342 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 126812206336