bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: all_orgs
14,240,465 sequences; 5,121,972,263 total letters
Query= Contig-6_CDS_annotation_glimmer3.pl_2_3
Length=357
Score E
Sequences producing significant alignments: (Bits) Value
ppi:YSA_09128 lambda family phage tail tape measure protein 39.7 1.3
sita:101753552 uncharacterized LOC101753552 38.9 2.2
hch:HCH_06249 hypothetical protein 36.2 5.1
ppun:PP4_15500 pvdR; pyoverdine efflux pump membrane fusion pr... 37.0 5.9
> ppi:YSA_09128 lambda family phage tail tape measure protein
Length=1096
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 36/126 (29%), Positives = 49/126 (39%), Gaps = 19/126 (15%)
Query 7 AATLLGSGI--LGASAIGSTVAGNKGNASIAQQNNAFNEKMLQKQMDYNTQMYQQQLGDQ 64
AA+ L SG+ LG SA+GS G GN A + + Q Y + + Q LG
Sbjct 908 AASSLLSGLVGLGVSAVGSYFGGGSGNGMTPGSAGAISSNLGASQAGYGSTYFPQALGGA 967
Query 65 WQFYNDAKQNSWDMFNAANDYNSASAQRERLEAAGLNPYLMMSGGNAGTATA-QSSPQAS 123
W N MF + + + LN M GN G A + P+A
Sbjct 968 W-------SNGVQMFAKGAGFATNNI---------LNTPTMFGMGNGGLGVAGEDGPEAI 1011
Query 124 SPSAQG 129
P A+G
Sbjct 1012 MPLARG 1017
> sita:101753552 uncharacterized LOC101753552
Length=1656
Score = 38.9 bits (89), Expect = 2.2, Method: Composition-based stats.
Identities = 39/163 (24%), Positives = 76/163 (47%), Gaps = 12/163 (7%)
Query 154 DKIATQPDRDVKSAEADNLRIEGKYKAAKTIAEIVQMRTNAKTQEGRLALDKLIYSIDKD 213
+ I + D +++ N +I + ++ A I +R+ K + R +K S
Sbjct 1342 ENIRLREDMEMEQTNFTNEKIALNQRLTESEATIGHLRSELKAERDRFTREKKTLSDQMR 1401
Query 214 LKSSQMDVNR----ESIANMQAERKLTNVQTLLVDKQLSWMDAQSKMDLAQKAADI---- 265
SQ++ R E IA + AE+K V+ + QLS + AQ + +L + +
Sbjct 1402 EIESQLEWVRSEKDEQIAKLSAEKKNLQVRLNDAESQLSMVKAQKREELKKVTKEKITLA 1461
Query 266 -QLKYAQGALTRKQVDHEIAKIAETEVRTSLDIQEQTTNVLKQ 307
+LK A+ +RK+ D E+ + A E +T +I++ N +++
Sbjct 1462 ERLKNAEA--SRKRFDDELKRYA-AETQTREEIRKSLENEVRR 1501
> hch:HCH_06249 hypothetical protein
Length=161
Score = 36.2 bits (82), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 57/133 (43%), Gaps = 10/133 (8%)
Query 95 LEAAGLNPYLMMSGGNAGTATAQSSPQASSPSAQGVTPPTATPYSADYSGITQGLGMVLD 154
+ G+NPY N T T Q + Q S+P+ + TA P D +G + +
Sbjct 16 MTGCGVNPYR----SNTTTETGQETAQPSTPATE-----TAAPQQPDRTGRPVSPPVRIS 66
Query 155 KIATQPDRDVKSAEADNLRIEGKYKAAKTIAEIVQMRTNAKTQEGRLALDKLIYSIDKDL 214
++ P A A+ EG+Y A + E Q R + K + L + +L Y +
Sbjct 67 RVEPTPAARQMLANAEAAAREGRYDQAMLMVERAQ-RMSPKAGDVYLMMARLHYDQQRYA 125
Query 215 KSSQMDVNRESIA 227
KS Q+ + S+A
Sbjct 126 KSEQLCLKALSLA 138
> ppun:PP4_15500 pvdR; pyoverdine efflux pump membrane fusion
protein PvdR
Length=390
Score = 37.0 bits (84), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 26/90 (29%), Positives = 48/90 (53%), Gaps = 9/90 (10%)
Query 205 KLIYSIDKDLKSSQMDVNRESIANMQAERKLTNVQTLLVDKQLSWMDAQSKMDLAQKAA- 263
+L+ ID + +++D R SI N++A+ Q LL +QL + + DLA A
Sbjct 88 QLLVEIDPSTQQARLDAGRFSIDNLKAQLAEQRAQYLLAQQQL-----KRQRDLAAAGAT 142
Query 264 ---DIQLKYAQGALTRKQVDHEIAKIAETE 290
D+Q +AQ +T+ ++D +A+I + +
Sbjct 143 RDEDVQTAFAQMKVTQARIDMFLAQIRQAQ 172
Lambda K H a alpha
0.310 0.123 0.334 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 672638406768