bitscore colors: <40, 40-50 , 50-80, 80-200, >200

           BLASTP 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: all_orgs
           14,240,465 sequences; 5,121,972,263 total letters



Query= Contig-31_CDS_annotation_glimmer3.pl_2_1

Length=79
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  rpf:Rpic12D_0736  transposase IS204/IS1001/IS1096/IS1165 family...  33.9    2.5


> rpf:Rpic12D_0736  transposase IS204/IS1001/IS1096/IS1165 family 
protein
Length=431

 Score = 33.9 bits (76),  Expect = 2.5, Method: Composition-based stats.
 Identities = 20/47 (43%), Positives = 25/47 (53%), Gaps = 3/47 (6%)

Query  11   DIPIVYTKKTDGVLPAFDIRTDRFEV---AREAMSKVQESEMAKEAQ  54
            D+   Y K     LP   I  DRF V   A EAM +V+ +EMA +AQ
Sbjct  219  DMSAAYAKGVALALPEAQISYDRFHVVSMAIEAMDQVRRAEMATDAQ  265



Lambda      K        H        a         alpha
   0.307    0.125    0.329    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127888521377