bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: all_orgs
14,240,465 sequences; 5,121,972,263 total letters
Query= Contig-30_CDS_annotation_glimmer3.pl_2_2
Length=98
Score E
Sequences producing significant alignments: (Bits) Value
rtr:RTCIAT899_CH18610 lytic murein transglycosylase 33.1 4.8
ecas:ECBG_02899 Rrf2 family protein 32.7 5.6
pami:JCM7686_1895 GMP synthase (EC:6.3.5.2) 33.1 5.7
dar:Daro_2777 2-oxoacid ferredoxin oxidoreductase 33.1 6.7
pbl:PAAG_00453 C2H2 transcription factor (AmdA) 33.1 6.7
pper:PRUPE_ppa026950mg hypothetical protein 32.7 7.1
ptm:GSPATT00003966001 hypothetical protein 32.7 9.4
> rtr:RTCIAT899_CH18610 lytic murein transglycosylase
Length=262
Score = 33.1 bits (74), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 32/57 (56%), Gaps = 2/57 (4%)
Query 25 DGSGSVDVLPGRPDVVVEPSDFDKGEKFNPEIEFDP--NSFSRMDKFDGLEVGQELI 79
DG+G VD++ R D + ++F +G + P + P ++FS + ++ +V Q+ I
Sbjct 196 DGNGRVDLVGSRADALASTANFLRGHGWQPGAGYQPGESNFSAIAGWNDAKVYQQAI 252
> ecas:ECBG_02899 Rrf2 family protein
Length=141
Score = 32.7 bits (73), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 22/76 (29%), Positives = 37/76 (49%), Gaps = 18/76 (24%)
Query 7 LEDAPAYVSRGQRIMSVLDGSGSVDVLPGRPDVVVEPSDFDKGEKFNPEIEFDPNSFSRM 66
+E PAYV +RIMS L +G ++ G+P NP++ +PN S +
Sbjct 34 VETNPAYV---RRIMSDLRIAGLIESQRGKP---------------NPKLTKEPNEISLL 75
Query 67 DKFDGLEVGQELIDSE 82
D + +E Q L+ ++
Sbjct 76 DIYASVEKDQHLLHAD 91
> pami:JCM7686_1895 GMP synthase (EC:6.3.5.2)
Length=519
Score = 33.1 bits (74), Expect = 5.7, Method: Composition-based stats.
Identities = 20/67 (30%), Positives = 34/67 (51%), Gaps = 9/67 (13%)
Query 13 YVSRGQRIMSVLDGSGSVDVLPGRPDVVV--EPSDFDKGEKFNPEIEFDPN------SFS 64
++S G R+ + DG + + P P +V E +F G +F+PE+ PN +F+
Sbjct 135 WMSHGDRVTKIADGFEVIGISPNAPFAIVADETRNF-YGVQFHPEVHHTPNGKRLLENFT 193
Query 65 RMDKFDG 71
R+ F G
Sbjct 194 RLAGFTG 200
> dar:Daro_2777 2-oxoacid ferredoxin oxidoreductase
Length=1186
Score = 33.1 bits (74), Expect = 6.7, Method: Composition-based stats.
Identities = 24/78 (31%), Positives = 38/78 (49%), Gaps = 8/78 (10%)
Query 20 IMSVLDGSGSVDVLPGRPDVVVEPSDFDKGEKFNPEIEFDPNSFSRMDKFDGLEVGQELI 79
+ +V DG+G+ ++ P R D V FD G+ F P + N + + LE+ Q L
Sbjct 206 VTNVADGTGTANISPERLDFVTPDLTFD-GKPFTPNMNLGMNV-----RVEALEMEQSLY 259
Query 80 DS--EIARSKAASKSTNS 95
EIAR A + + N+
Sbjct 260 TRRHEIARRYARANNLNN 277
> pbl:PAAG_00453 C2H2 transcription factor (AmdA)
Length=871
Score = 33.1 bits (74), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 17/44 (39%), Positives = 21/44 (48%), Gaps = 0/44 (0%)
Query 36 RPDVVVEPSDFDKGEKFNPEIEFDPNSFSRMDKFDGLEVGQELI 79
RPDV V PS + +FNP +D N S LE QE +
Sbjct 127 RPDVSVHPSQIAEPTQFNPSWGYDLNLLSHAASHVALEGQQEAV 170
> pper:PRUPE_ppa026950mg hypothetical protein
Length=318
Score = 32.7 bits (73), Expect = 7.1, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 27/61 (44%), Gaps = 9/61 (15%)
Query 19 RIMSVLDGSGSVDVLP--GRPDVVVEPSDFDKGEKFNPEIEFD-------PNSFSRMDKF 69
R +S LD S + LP G PD S FD G+ F FD P+SF + F
Sbjct 5 RTLSSLDESDAFGTLPSFGEPDAFGTRSSFDVGDAFGTPSSFDESDAFGTPSSFGTLPSF 64
Query 70 D 70
D
Sbjct 65 D 65
> ptm:GSPATT00003966001 hypothetical protein
Length=490
Score = 32.7 bits (73), Expect = 9.4, Method: Composition-based stats.
Identities = 17/45 (38%), Positives = 29/45 (64%), Gaps = 3/45 (7%)
Query 45 DFDKGEKFNPEIEFDPNSFSRM-DKFDGLEVGQELIDSEIARSKA 88
D D G+++ E++ +PN S + DK+D E+ Q+++D E A KA
Sbjct 366 DHDNGDQYEDEVQMNPNRNSNLKDKYD--ELIQQILDEERALKKA 408
Lambda K H a alpha
0.311 0.132 0.369 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 129203694348