bitscore colors: <40, 40-50 , 50-80, 80-200, >200

           BLASTP 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: all_orgs
           14,240,465 sequences; 5,121,972,263 total letters





Query= Contig-2_CDS_annotation_glimmer3.pl_2_4

Length=365
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  cqu:CpipJ_CPIJ006981  hypothetical protein                          39.3    1.2
  rha:RHA1_ro03128  deacetylase                                       38.5    2.0
  daf:Desaf_2702  Dihydrodipicolinate synthase                        37.0    4.8
  ncs:NCAS_0G03920  NCAS0G03920; hypothetical protein                 37.4    5.0
  nev:NTE_01179  site-specific recombinase XerD                       37.0    5.4


> cqu:CpipJ_CPIJ006981  hypothetical protein
Length=427

 Score = 39.3 bits (90),  Expect = 1.2, Method: Compositional matrix adjust.
 Identities = 26/91 (29%), Positives = 41/91 (45%), Gaps = 6/91 (7%)

Query  13   IAIVPALIGAIGAIGAAGFGAAANNKNVAQNQMNNDFNAREAQKARDFQLEMWNRQNEYN  72
            +  +P++IG++G I   G G+ +   + A    + DF        +DFQ+ M N  N Y 
Sbjct  182  VLFLPSIIGSLGKIVGKGLGSVSGLSHPAATVEDLDFKDNSYNSDQDFQMNMEN--NAYL  239

Query  73   SPANQRKLRAEAGYNPYLGYDSNTGVAGSTG  103
             P +     +   YN  L YD+N G     G
Sbjct  240  PPLDSHP--SGTSYN--LMYDANNGALSRLG  266


> rha:RHA1_ro03128  deacetylase
Length=311

 Score = 38.5 bits (88),  Expect = 2.0, Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 70/150 (47%), Gaps = 22/150 (15%)

Query  175  YKKWMRETGLQRAQL---DYDT---NKQNLQNLRWSNLIQMAERT--NLLLSANTKRTLN  226
            Y ++ ++TG++        YD+   N   L+ L  S  IQ+   T  +  L+  +K  + 
Sbjct  138  YTQFAKDTGVRLTYFVNGQYDSWTDNAALLRPLVESGQIQLGNHTWSHPDLTTVSKSRIA  197

Query  227  KYLDQSEQ---TRINVMAAQYYDLMAAGHLKYQQCKESIAKQILYSKQGSWYDSMANKNN  283
              L ++ +   TR  V AA Y+      + K+    +S+A  + Y+    WY S+++ + 
Sbjct  198  DELSKNHKFLKTRYGVDAAPYF---RPPYGKHNAAVDSVAADLGYTVPTLWYGSLSDSS-  253

Query  284  LDYRNALALADDYIAAMSTQYESQTAYNMG  313
                    + +DYI  M+TQY +Q A  +G
Sbjct  254  -------LITEDYIVKMATQYFTQQAIVIG  276


> daf:Desaf_2702  Dihydrodipicolinate synthase
Length=291

 Score = 37.0 bits (84),  Expect = 4.8, Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 32/65 (49%), Gaps = 6/65 (9%)

Query  5    FLSSDGYDIAIVPALIGAIGAIGAAGFGAAANNKNVAQNQMNNDFNAREAQKARD--FQL  62
            FL   G D  ++P L  AIG +GA      +N K  A + + N FN  +  KARD  FQL
Sbjct  181  FLVLSGDDFTVLPTL--AIGGVGA--ISVVSNIKPAAMSGLVNAFNQGDLDKARDLHFQL  236

Query  63   EMWNR  67
                R
Sbjct  237  APLCR  241


> ncs:NCAS_0G03920  NCAS0G03920; hypothetical protein
Length=701

 Score = 37.4 bits (85),  Expect = 5.0, Method: Compositional matrix adjust.
 Identities = 30/118 (25%), Positives = 58/118 (49%), Gaps = 8/118 (7%)

Query  93   DSNTGVAGSTGSTSQAQAASPLSL-NPEV-YSELGSQLGRAGQMIYQERESNARTKALQG  150
            +SNTG      S S     S  +  NP   ++E  ++  R    I   + +NA + +   
Sbjct  269  NSNTGKPAKKRSKSHPTIYSNANFRNPHTEFAENFNKKRRRSTTIINAQTTNAASASETN  328

Query  151  DADVARAQALQVFSNVDWGKLSPDYKKWMRETGLQRAQLDYDTNKQNLQNLRWSNLIQ  208
            + + +       +S++ W  +SPD +K++ E+  +   ++   N+Q+L++L  SNLIQ
Sbjct  329  ETNPSS------YSDLHWNNMSPDLQKFITESFKKDLIINKHCNEQDLKDLNLSNLIQ  380


> nev:NTE_01179  site-specific recombinase XerD
Length=312

 Score = 37.0 bits (84),  Expect = 5.4, Method: Compositional matrix adjust.
 Identities = 43/150 (29%), Positives = 65/150 (43%), Gaps = 22/150 (15%)

Query  148  LQGDADVARAQALQVFSNVDWGKLSPDYKKWMRETGL------QRAQLDYDTNKQNLQNL  201
            LQG+  V     +  F  ++   LSP YK  +R  GL      QRA+LD+D  K      
Sbjct  48   LQGEPKVIEDSIIAYFQKLEDDGLSPSYKNVIR-AGLQKFYVSQRARLDWDYIK------  100

Query  202  RWSNLIQMAERTNLLLSANTK---RTLNKYLDQSEQTRINVMAAQYYDLMAAGHLKYQQC  258
              S ++     +  L  A TK     L K+ D   +  I ++A     + A   LKY+  
Sbjct  101  --SQIVSKNPDSVGLDRAYTKAEIALLLKHADLKLRATILLLATTGMRVEALCELKYKHL  158

Query  259  KESIAKQILYSK----QGSWYDSMANKNNL  284
            +  +   +LY K      + YD+ A+KN L
Sbjct  159  RPVLKFDLLYIKIYAGTNTEYDAFASKNCL  188



Lambda      K        H        a         alpha
   0.313    0.126    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 697550940352