bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: all_orgs
14,240,465 sequences; 5,121,972,263 total letters
Query= Contig-21_CDS_annotation_glimmer3.pl_2_2
Length=341
Score E
Sequences producing significant alignments: (Bits) Value
nii:Nit79A3_1233 methane monooxygenase/ammonia monooxygenase s... 38.9 1.2
wwe:P147_WWE3C01G0238 hypothetical protein 38.5 1.9
nit:NAL212_2606 methane monooxygenase/ammonia monooxygenase su... 38.1 2.0
nit:NAL212_1386 methane monooxygenase/ammonia monooxygenase su... 38.1 2.0
nit:NAL212_0797 methane monooxygenase/ammonia monooxygenase su... 38.1 2.0
nii:Nit79A3_2886 methane monooxygenase/ammonia monooxygenase s... 37.4 2.9
nii:Nit79A3_1595 methane monooxygenase/ammonia monooxygenase s... 37.4 2.9
nii:Nit79A3_1079 methane monooxygenase/ammonia monooxygenase s... 37.4 2.9
nii:Nit79A3_0471 methane monooxygenase/ammonia monooxygenase s... 37.4 2.9
lrc:LOCK908_2979 Adhesion exoprotein 38.1 3.1
lrl:LC705_02890 adhesion exoprotein 38.1 3.1
lro:LOCK900_2893 Hypothetical protein 37.7 3.8
nit:NAL212_2818 methane monooxygenase/ammonia monooxygenase su... 37.0 4.2
nit:NAL212_2303 methane monooxygenase/ammonia monooxygenase su... 37.0 4.2
mze:101478543 PH-interacting protein-like 37.4 6.2
cce:Ccel_1947 hisS; histidyl-tRNA synthetase 36.6 8.6
clb:Clo1100_2291 histidyl-tRNA synthetase 36.2 9.4
> nii:Nit79A3_1233 methane monooxygenase/ammonia monooxygenase
subunit C
Length=269
Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/64 (27%), Positives = 35/64 (55%), Gaps = 0/64 (0%)
Query 163 LGSKTGIAGVYGSTSNNIEVFCDEESYIIGLLTVTPVPVYTQLLPKDFVYNGLLDHYQPE 222
+ + G G S + ++ ++ D + Y IG+LT+ V ++ + F Y+ +D +PE
Sbjct 1 MATTYGTTGASSSANYDMSLWYDSKYYKIGMLTMLLVAIFWIWYQRTFAYSHGMDSMEPE 60
Query 223 FDRI 226
FD++
Sbjct 61 FDKV 64
> wwe:P147_WWE3C01G0238 hypothetical protein
Length=440
Score = 38.5 bits (88), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 61/132 (46%), Gaps = 23/132 (17%)
Query 196 VTP--VPVYTQLLPKD-FVYNGLLDHYQPEFDRIGFQPITYKEICPMNIV---GDDDTEQ 249
+TP +P + +LLP D +N +LD + F+ GF P+ I I+ G ++TE+
Sbjct 7 ITPSILPGFMELLPNDQLAFNRMLDSIRESFELCGFMPLDTPVIEKAEILMTKGGEETEK 66
Query 250 -----------LSKTFGYQRPWYEYVAKYDSAHGLFRKDMKNFIMSRVFKG-LPQLG--Q 295
L+ F P+ YV++ + K + + +VF+G PQ G +
Sbjct 67 QTYSFKKGDNDLALRFDLTVPFSRYVSQRMNELSF---PFKRYQIGKVFRGERPQKGRFR 123
Query 296 QFLLVDSDTVNQ 307
+F D D VN+
Sbjct 124 EFYQCDIDIVNK 135
> nit:NAL212_2606 methane monooxygenase/ammonia monooxygenase
subunit C
Length=269
Score = 38.1 bits (87), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/64 (30%), Positives = 36/64 (56%), Gaps = 6/64 (9%)
Query 169 IAGVYGSTSN------NIEVFCDEESYIIGLLTVTPVPVYTQLLPKDFVYNGLLDHYQPE 222
+A YG+TS ++ ++ D + Y IG+LT+ V ++ + F Y+ +D +PE
Sbjct 1 MATTYGTTSGAASANYDMSLWYDSKYYKIGMLTMLLVAIFWIWYQRTFAYSHGMDSMEPE 60
Query 223 FDRI 226
FD++
Sbjct 61 FDKV 64
> nit:NAL212_1386 methane monooxygenase/ammonia monooxygenase
subunit C
Length=269
Score = 38.1 bits (87), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/64 (30%), Positives = 36/64 (56%), Gaps = 6/64 (9%)
Query 169 IAGVYGSTSN------NIEVFCDEESYIIGLLTVTPVPVYTQLLPKDFVYNGLLDHYQPE 222
+A YG+TS ++ ++ D + Y IG+LT+ V ++ + F Y+ +D +PE
Sbjct 1 MATTYGTTSGAASANYDMSLWYDSKYYKIGMLTMLLVAIFWIWYQRTFAYSHGMDSMEPE 60
Query 223 FDRI 226
FD++
Sbjct 61 FDKV 64
> nit:NAL212_0797 methane monooxygenase/ammonia monooxygenase
subunit C
Length=269
Score = 38.1 bits (87), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/64 (30%), Positives = 36/64 (56%), Gaps = 6/64 (9%)
Query 169 IAGVYGSTSN------NIEVFCDEESYIIGLLTVTPVPVYTQLLPKDFVYNGLLDHYQPE 222
+A YG+TS ++ ++ D + Y IG+LT+ V ++ + F Y+ +D +PE
Sbjct 1 MATTYGTTSGAASANYDMSLWYDSKYYKIGMLTMLLVAIFWIWYQRTFAYSHGMDSMEPE 60
Query 223 FDRI 226
FD++
Sbjct 61 FDKV 64
> nii:Nit79A3_2886 methane monooxygenase/ammonia monooxygenase
subunit C
Length=269
Score = 37.4 bits (85), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/64 (30%), Positives = 36/64 (56%), Gaps = 6/64 (9%)
Query 169 IAGVYGSTSNN------IEVFCDEESYIIGLLTVTPVPVYTQLLPKDFVYNGLLDHYQPE 222
+A YG+TS + + ++ D + Y IG+LT+ V ++ + F Y+ +D +PE
Sbjct 1 MATTYGTTSASSSANYDMSLWYDSKYYKIGMLTMLLVAIFWIWYQRTFAYSHGMDSMEPE 60
Query 223 FDRI 226
FD++
Sbjct 61 FDKV 64
> nii:Nit79A3_1595 methane monooxygenase/ammonia monooxygenase
subunit C
Length=269
Score = 37.4 bits (85), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/64 (30%), Positives = 36/64 (56%), Gaps = 6/64 (9%)
Query 169 IAGVYGSTSNN------IEVFCDEESYIIGLLTVTPVPVYTQLLPKDFVYNGLLDHYQPE 222
+A YG+TS + + ++ D + Y IG+LT+ V ++ + F Y+ +D +PE
Sbjct 1 MATTYGTTSASSSANYDMSLWYDSKYYKIGMLTMLLVAIFWIWYQRTFAYSHGMDSMEPE 60
Query 223 FDRI 226
FD++
Sbjct 61 FDKV 64
> nii:Nit79A3_1079 methane monooxygenase/ammonia monooxygenase
subunit C
Length=269
Score = 37.4 bits (85), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/64 (30%), Positives = 36/64 (56%), Gaps = 6/64 (9%)
Query 169 IAGVYGSTSNN------IEVFCDEESYIIGLLTVTPVPVYTQLLPKDFVYNGLLDHYQPE 222
+A YG+TS + + ++ D + Y IG+LT+ V ++ + F Y+ +D +PE
Sbjct 1 MATTYGTTSASSSANYDMSLWYDSKYYKIGMLTMLLVAIFWIWYQRTFAYSHGMDSMEPE 60
Query 223 FDRI 226
FD++
Sbjct 61 FDKV 64
> nii:Nit79A3_0471 methane monooxygenase/ammonia monooxygenase
subunit C
Length=269
Score = 37.4 bits (85), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/64 (30%), Positives = 36/64 (56%), Gaps = 6/64 (9%)
Query 169 IAGVYGSTSNN------IEVFCDEESYIIGLLTVTPVPVYTQLLPKDFVYNGLLDHYQPE 222
+A YG+TS + + ++ D + Y IG+LT+ V ++ + F Y+ +D +PE
Sbjct 1 MATTYGTTSASSSANYDMSLWYDSKYYKIGMLTMLLVAIFWIWYQRTFAYSHGMDSMEPE 60
Query 223 FDRI 226
FD++
Sbjct 61 FDKV 64
> lrc:LOCK908_2979 Adhesion exoprotein
Length=2299
Score = 38.1 bits (87), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 27/105 (26%), Positives = 47/105 (45%), Gaps = 9/105 (9%)
Query 118 DIDIRFDELLMPEFIGGISRELSMRTVEQTIDQQGAD--------SQGQYAEALGSKTGI 169
D+ +D GI +++ E+T+D AD G+Y+ L S G
Sbjct 873 DVSFEYDGKTKASEAKGIQATVTLGETEKTVDLTSADIVVENDGVDAGKYSYQL-SDAGK 931
Query 170 AGVYGSTSNNIEVFCDEESYIIGLLTVTPVPVYTQLLPKDFVYNG 214
A + +T NN ++ D+ + ++G +T+TP V F Y+G
Sbjct 932 AKLQAATGNNYQLTADDLAKVMGTITITPAAVTADSNDVSFEYDG 976
> lrl:LC705_02890 adhesion exoprotein
Length=2299
Score = 38.1 bits (87), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 27/105 (26%), Positives = 47/105 (45%), Gaps = 9/105 (9%)
Query 118 DIDIRFDELLMPEFIGGISRELSMRTVEQTIDQQGAD--------SQGQYAEALGSKTGI 169
D+ +D GI +++ E+T+D AD G+Y+ L S G
Sbjct 873 DVSFEYDGKTKASEAKGIQATVTLGETEKTVDLTSADIVVENDGVDAGKYSYQL-SDAGK 931
Query 170 AGVYGSTSNNIEVFCDEESYIIGLLTVTPVPVYTQLLPKDFVYNG 214
A + +T NN ++ D+ + ++G +T+TP V F Y+G
Sbjct 932 AKLQAATGNNYQLTADDLAKVMGTITITPAAVTADSNDVSFEYDG 976
> lro:LOCK900_2893 Hypothetical protein
Length=2619
Score = 37.7 bits (86), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 29/105 (28%), Positives = 45/105 (43%), Gaps = 9/105 (9%)
Query 118 DIDIRFDELLMPEFIGGISRELSMRTVEQTIDQQGAD--------SQGQYAEALGSKTGI 169
D+ +D GI + + E+T+D AD + GQY+ L S G
Sbjct 1961 DVSFEYDGKTKASEAKGIQVIVKLGETEKTVDLTSADIVVANDDVNAGQYSYQL-SDAGK 2019
Query 170 AGVYGSTSNNIEVFCDEESYIIGLLTVTPVPVYTQLLPKDFVYNG 214
A + +T NN ++ D+ + I G +T+TP F YNG
Sbjct 2020 AKLQAATGNNYQLTADDLAKITGTITITPAVATADSNNVSFEYNG 2064
> nit:NAL212_2818 methane monooxygenase/ammonia monooxygenase
subunit C
Length=295
Score = 37.0 bits (84), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 36/64 (56%), Gaps = 6/64 (9%)
Query 169 IAGVYGSTSN------NIEVFCDEESYIIGLLTVTPVPVYTQLLPKDFVYNGLLDHYQPE 222
+A YG+TS ++ ++ D + Y +G+LT+ V ++ + F Y+ +D +PE
Sbjct 27 MATTYGTTSGAASANYDMSLWYDSKYYKLGMLTMLLVAIFWIWYQRTFAYSHGMDSMEPE 86
Query 223 FDRI 226
FD++
Sbjct 87 FDKV 90
> nit:NAL212_2303 methane monooxygenase/ammonia monooxygenase
subunit C
Length=269
Score = 37.0 bits (84), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 36/64 (56%), Gaps = 6/64 (9%)
Query 169 IAGVYGSTSN------NIEVFCDEESYIIGLLTVTPVPVYTQLLPKDFVYNGLLDHYQPE 222
+A YG+TS ++ ++ D + Y +G+LT+ V ++ + F Y+ +D +PE
Sbjct 1 MATTYGTTSGAASANYDMSLWYDSKYYKLGMLTMLLVAIFWIWYQRTFAYSHGMDSMEPE 60
Query 223 FDRI 226
FD++
Sbjct 61 FDKV 64
> mze:101478543 PH-interacting protein-like
Length=1835
Score = 37.4 bits (85), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 37/86 (43%), Gaps = 1/86 (1%)
Query 172 VYGSTSNNIEV-FCDEESYIIGLLTVTPVPVYTQLLPKDFVYNGLLDHYQPEFDRIGFQP 230
+YGS N +E FC + L + P VYT + + L Y FDR G +
Sbjct 139 IYGSPPNIVETSFCRRLNGAYRLRQLVPTAVYTHMKMHKRILGHLSSVYCVTFDRTGRRI 198
Query 231 ITYKEICPMNIVGDDDTEQLSKTFGY 256
T + C + I G DD L+ G+
Sbjct 199 FTGSDDCLVKIWGTDDGRLLATLRGH 224
> cce:Ccel_1947 hisS; histidyl-tRNA synthetase
Length=442
Score = 36.6 bits (83), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 71/164 (43%), Gaps = 39/164 (24%)
Query 193 LLTVTPVPVYTQLLPKD-FVYNGLLDHYQPEFDRIGFQPI------------------TY 233
++T + +P + +LLP D V+N +LD + +++ GF PI T
Sbjct 5 VITPSILPGFMELLPADQIVFNNMLDIIKKTYEKYGFIPIDTPMIEKSEVLLAKSGGETE 64
Query 234 KEICPMNIVGDDDTEQLSKTFGYQRPWYEYVAKYDSAHGLFRKDMKNFIMSRVFKG-LPQ 292
K++ N GD+D LS F P YV+++ G K + + +VF+G PQ
Sbjct 65 KQVYRFN-KGDND---LSLRFDLTVPLARYVSQH---FGDLTFPFKRYHIGKVFRGEKPQ 117
Query 293 LG--QQFLLVDSDTVN----------QVFSVTEYTDKIFGYVKF 324
G ++F D D + ++ SV T K G+ F
Sbjct 118 KGRFREFYQCDIDIIGNENLSLINDAEILSVIYSTFKALGFDDF 161
> clb:Clo1100_2291 histidyl-tRNA synthetase
Length=442
Score = 36.2 bits (82), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 66/142 (46%), Gaps = 30/142 (21%)
Query 193 LLTVTPVPVYTQLLPKD-FVYNGLLDHYQPEFDRIGFQPI------------------TY 233
++T + +P + +LLP D V+N +LD + +++ GF P+ T
Sbjct 5 VITPSILPGFMELLPVDQIVFNNMLDTIKKTYEKYGFIPLDTPMIEKSEVLLAKSGGETE 64
Query 234 KEICPMNIVGDDDTEQLSKTFGYQRPWYEYVAKYDSAHGLFRKDMKNFIMSRVFKG-LPQ 292
K++ N GD+D LS F P YV+++ G K + + +VF+G PQ
Sbjct 65 KQVYRFN-KGDND---LSLRFDLTVPLARYVSQH---FGDLTFPFKRYHIGKVFRGEKPQ 117
Query 293 LG--QQFLLVDSDTV-NQVFSV 311
G ++F D D + N+ SV
Sbjct 118 KGRFREFYQCDIDIIGNESLSV 139
Lambda K H a alpha
0.319 0.138 0.400 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 628789739763