bitscore colors: <40, 40-50 , 50-80, 80-200, >200

           BLASTP 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: all_orgs
           14,240,465 sequences; 5,121,972,263 total letters





Query= Contig-13_CDS_annotation_glimmer3.pl_2_2

Length=638
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  amf:AMF_616  rluD; ribosomal large subunit pseudouridine syntha...  37.7    6.1
  amp:U128_03205  pseudouridylate synthase                            37.7    6.2
  amw:U370_03090  pseudouridylate synthase                            37.7    6.2
  acn:ACIS_00509  pseudouridylate synthase                            37.7    6.3
  ama:AM825  sfhB; sfhb-like protein                                  37.7    7.0


> amf:AMF_616  rluD; ribosomal large subunit pseudouridine synthase 
D
Length=321

 Score = 37.7 bits (86),  Expect = 6.1, Method: Compositional matrix adjust.
 Identities = 27/73 (37%), Positives = 34/73 (47%), Gaps = 11/73 (15%)

Query  20   VNLHEYKMSTHDLSTIVRNTQSPGTLVPN----LCLVGQKGDTIDIDIDASVLTHPTTGP  75
            +N + Y   T D+ TIV   Q P TL PN    L +V +  D I ID D  +  HP  G 
Sbjct  43   INNNSYLTKTGDVYTIVTAVQKPSTLSPNYDIDLKVVYEDHDVIVIDKDPYIAVHPGNG-  101

Query  76   LFGSFKLEHHIYT  88
                  +EHH  T
Sbjct  102  ------IEHHTIT  108


> amp:U128_03205  pseudouridylate synthase
Length=329

 Score = 37.7 bits (86),  Expect = 6.2, Method: Compositional matrix adjust.
 Identities = 27/73 (37%), Positives = 34/73 (47%), Gaps = 11/73 (15%)

Query  20   VNLHEYKMSTHDLSTIVRNTQSPGTLVPN----LCLVGQKGDTIDIDIDASVLTHPTTGP  75
            +N + Y   T D+ TIV   Q P TL PN    L +V +  D I ID D  +  HP  G 
Sbjct  49   INDNSYLTKTGDVYTIVTAVQKPSTLSPNYDIDLKVVYEDHDVIVIDKDPYIAVHPGNG-  107

Query  76   LFGSFKLEHHIYT  88
                  +EHH  T
Sbjct  108  ------IEHHTIT  114


> amw:U370_03090  pseudouridylate synthase
Length=329

 Score = 37.7 bits (86),  Expect = 6.2, Method: Compositional matrix adjust.
 Identities = 27/73 (37%), Positives = 34/73 (47%), Gaps = 11/73 (15%)

Query  20   VNLHEYKMSTHDLSTIVRNTQSPGTLVPN----LCLVGQKGDTIDIDIDASVLTHPTTGP  75
            +N + Y   T D+ TIV   Q P TL PN    L +V +  D I ID D  +  HP  G 
Sbjct  49   INDNSYLTKTGDVYTIVTAVQKPSTLSPNYDIDLKVVYEDHDVIVIDKDPYIAVHPGNG-  107

Query  76   LFGSFKLEHHIYT  88
                  +EHH  T
Sbjct  108  ------IEHHTIT  114


> acn:ACIS_00509  pseudouridylate synthase
Length=327

 Score = 37.7 bits (86),  Expect = 6.3, Method: Compositional matrix adjust.
 Identities = 27/73 (37%), Positives = 34/73 (47%), Gaps = 11/73 (15%)

Query  20   VNLHEYKMSTHDLSTIVRNTQSPGTLVPN----LCLVGQKGDTIDIDIDASVLTHPTTGP  75
            +N + Y   T D+ TIV   Q P TL PN    L +V +  D I ID D  +  HP  G 
Sbjct  49   INDNSYLTKTGDVYTIVTAVQKPSTLSPNYDIDLKVVYEDHDVIVIDKDPYIAVHPGNG-  107

Query  76   LFGSFKLEHHIYT  88
                  +EHH  T
Sbjct  108  ------IEHHTIT  114


> ama:AM825  sfhB; sfhb-like protein
Length=327

 Score = 37.7 bits (86),  Expect = 7.0, Method: Compositional matrix adjust.
 Identities = 27/73 (37%), Positives = 34/73 (47%), Gaps = 11/73 (15%)

Query  20   VNLHEYKMSTHDLSTIVRNTQSPGTLVPN----LCLVGQKGDTIDIDIDASVLTHPTTGP  75
            +N + Y   T D+ TIV   Q P TL PN    L +V +  D I ID D  +  HP  G 
Sbjct  49   INNNSYLTKTGDVYTIVTAVQKPSTLSPNYDIDLKVVYEDHDVIVIDKDPYIAVHPGNG-  107

Query  76   LFGSFKLEHHIYT  88
                  +EHH  T
Sbjct  108  ------IEHHTIT  114



Lambda      K        H        a         alpha
   0.317    0.134    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1497089271516