bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: all_orgs
14,240,465 sequences; 5,121,972,263 total letters
Query= Contig-10_CDS_annotation_glimmer3.pl_2_2
Length=64
Score E
Sequences producing significant alignments: (Bits) Value
cic:CICLE_v10023610mg hypothetical protein 33.1 3.4
saw:SAHV_2120 pdp; pyrimidine-nucleoside phosphorylase 32.7 4.4
pper:PRUPE_ppa001249mg hypothetical protein 32.3 5.7
scos:SCR2_0183 putative primase-related protein (EC:3.1.26.8) 32.0 6.1
scon:SCRE_0183 putative primase-related protein (EC:3.1.26.8) 32.0 6.1
scg:SCI_0203 putative primase-related protein (EC:3.1.26.8) 32.0 6.1
lbl:LBL_2788 histidine kinase of a two-component regulator system 32.0 7.6
lbj:LBJ_0288 histidine kinase of a two-component regulator system 32.0 7.6
> cic:CICLE_v10023610mg hypothetical protein
Length=1484
Score = 33.1 bits (74), Expect = 3.4, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 0/38 (0%)
Query 21 EAENLKKALRQVSYFEKKTGYEIVSIEIIKNGKEEETK 58
E E L++AL+Q++YFEKK +V ++K E+ K
Sbjct 328 EYEGLREALKQLAYFEKKENSRVVQSGVLKGLNLEDIK 365
> saw:SAHV_2120 pdp; pyrimidine-nucleoside phosphorylase
Length=446
Score = 32.7 bits (73), Expect = 4.4, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 3/50 (6%)
Query 1 MKRFTIYWETPKGDEITTIEEAENLKKALRQVSYFEKKTGY--EIVSIEI 48
+++F I+ + GDE T I+ E L +A Q+ Y KK+GY E+VS +I
Sbjct 319 LEKFKIFIKNQGGDE-TVIDHPERLPQAQYQIEYKAKKSGYVTELVSNDI 367
> pper:PRUPE_ppa001249mg hypothetical protein
Length=872
Score = 32.3 bits (72), Expect = 5.7, Method: Composition-based stats.
Identities = 16/45 (36%), Positives = 27/45 (60%), Gaps = 0/45 (0%)
Query 19 IEEAENLKKALRQVSYFEKKTGYEIVSIEIIKNGKEEETKILLDK 63
+EEAENL K++ + F Y I + ++KNGK E +++L +
Sbjct 310 LEEAENLFKSMEKAGNFINLESYNIWLLGLVKNGKLLEARLVLKE 354
> scos:SCR2_0183 putative primase-related protein (EC:3.1.26.8)
Length=192
Score = 32.0 bits (71), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 18/37 (49%), Positives = 27/37 (73%), Gaps = 3/37 (8%)
Query 19 IEEA--ENLKKALRQVS-YFEKKTGYEIVSIEIIKNG 52
IE A E+LK AL QV+ +FEKKT ++I +++I+ G
Sbjct 100 IEHASYEDLKAALSQVTKHFEKKTDFDITRLDLIRLG 136
> scon:SCRE_0183 putative primase-related protein (EC:3.1.26.8)
Length=192
Score = 32.0 bits (71), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 18/37 (49%), Positives = 27/37 (73%), Gaps = 3/37 (8%)
Query 19 IEEA--ENLKKALRQVS-YFEKKTGYEIVSIEIIKNG 52
IE A E+LK AL QV+ +FEKKT ++I +++I+ G
Sbjct 100 IEHASYEDLKAALSQVTKHFEKKTDFDITRLDLIRLG 136
> scg:SCI_0203 putative primase-related protein (EC:3.1.26.8)
Length=192
Score = 32.0 bits (71), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 18/37 (49%), Positives = 27/37 (73%), Gaps = 3/37 (8%)
Query 19 IEEA--ENLKKALRQVS-YFEKKTGYEIVSIEIIKNG 52
IE A E+LK AL QV+ +FEKKT ++I +++I+ G
Sbjct 100 IEHASYEDLKAALSQVTKHFEKKTDFDITRLDLIRLG 136
> lbl:LBL_2788 histidine kinase of a two-component regulator system
Length=459
Score = 32.0 bits (71), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 37/63 (59%), Gaps = 4/63 (6%)
Query 6 IYWETPKGDEITTIEEAENLKKALRQVSYFEKKTGYEIVSI--EIIKNGK--EEETKILL 61
+ + P +++T + ++L K +R++ +FE KTG I ++ E++K+G E E IL+
Sbjct 159 LLFMNPAAEKLTGCKYKDHLGKPIREILFFENKTGDTIGNVVEEVLKSGLPIENENIILI 218
Query 62 DKQ 64
K
Sbjct 219 SKN 221
> lbj:LBJ_0288 histidine kinase of a two-component regulator system
Length=459
Score = 32.0 bits (71), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 37/63 (59%), Gaps = 4/63 (6%)
Query 6 IYWETPKGDEITTIEEAENLKKALRQVSYFEKKTGYEIVSI--EIIKNGK--EEETKILL 61
+ + P +++T + ++L K +R++ +FE KTG I ++ E++K+G E E IL+
Sbjct 159 LLFMNPAAEKLTGCKYKDHLGKPIREILFFENKTGDTIGNVVEEVLKSGLPIENENIILI 218
Query 62 DKQ 64
K
Sbjct 219 SKN 221
Lambda K H a alpha
0.310 0.131 0.353 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 129060834644