bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggnogv4.proteins.all.fa 14,875,530 sequences; 5,112,597,290 total letters Query= Contig-7_CDS_annotation_glimmer3.pl_2_5 Length=69 Score E Sequences producing significant alignments: (Bits) Value 162425.CADANIAP00004185 32.3 8.1 > 162425.CADANIAP00004185 Length=1773 Score = 32.3 bits (72), Expect = 8.1, Method: Composition-based stats. Identities = 18/57 (32%), Positives = 30/57 (53%), Gaps = 2/57 (4%) Query 2 AYDIDIETFPTIHNDIVDGIPESYVHYFKQYLYEIEDRRISQNTDV--SVRPLDALS 56 +YD + + +HND+VD + + +F++ R SQ+ D+ PLDALS Sbjct 1286 SYDHGVSSALKLHNDLVDNTARASLQFFQRVDIGSITNRFSQDLDLVDMSLPLDALS 1342 Lambda K H a alpha 0.322 0.142 0.411 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 126075615680