bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggnogv4.proteins.all.fa 14,875,530 sequences; 5,112,597,290 total letters Query= Contig-23_CDS_annotation_glimmer3.pl_2_3 Length=658 Score E Sequences producing significant alignments: (Bits) Value 585502.HMPREF0645_1835 71.2 3e-10 > 585502.HMPREF0645_1835 Length=553 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 57/200 (29%), Positives = 94/200 (47%), Gaps = 25/200 (13%) Query 426 DTSGGSFTLDTLNLAKKVYTMLNRIAISDGSYNAWIQTVYTSGGLNHIETPI-------Y 478 D+S G F++ +L A V +L+ + ++ ++ Y +E P Y Sbjct 290 DSSEGDFSVSSLRAAFAVDKLLSVTMRAGKTFQDQMRAHYG------VEIPDSRDGRVNY 343 Query 479 LGGSSLEIEFQEVVNNSGT---EDQP----LGTLAGRGVATNHKGGNIVFKADEPGYLFC 531 LGG +++ +V SGT E +P LG +AG+G + G IVF A E G L C Sbjct 344 LGGFDSDMQVSDVTQTSGTTATEYKPEAGYLGRVAGKGTGSGR--GRIVFDAKEHGVLMC 401 Query 532 ITSITPRVDYFQGNEWDMYLESLD--DLHKPQLDGIGFQDRLYKHINANTDSTEFNKTVG 589 I S+ P++ Y D ++ LD D P+ + +G Q +I++ + N +G Sbjct 402 IYSLVPQIQY-DCTRLDPMVDKLDRFDYFTPEFENLGMQPLNSSYISSFCTTDPKNPVLG 460 Query 590 KQPAWIEYMTNVNKTYGNFA 609 QP + EY T ++ +G FA Sbjct 461 YQPRYSEYKTALDVNHGQFA 480 Lambda K H a alpha 0.317 0.135 0.400 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 1505674193920