bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggnogv4.proteins.all.fa 14,875,530 sequences; 5,112,597,290 total letters Query= Contig-19_CDS_annotation_glimmer3.pl_2_2 Length=109 Score E Sequences producing significant alignments: (Bits) Value 349106.PsycPRwf_1803 38.9 0.087 > 349106.PsycPRwf_1803 Length=524 Score = 38.9 bits (89), Expect = 0.087, Method: Compositional matrix adjust. Identities = 28/98 (29%), Positives = 41/98 (42%), Gaps = 18/98 (18%) Query 3 KKKKITCPSCFSKDSSSLRDYNPFVDKVVVAHPMSYYLNGGVDLQGISTRKPLPAAFDDA 62 K K+ C KD+ +RD +P V V AH + +ST P+P A D Sbjct 132 KNGKVIVTGCLGKDAQKIRDMHPAVLAVTGAHAYDEVIT------AVSTHAPMPQAIQDK 185 Query 63 ESIASGDVNVFTDPTVGKLDLMDMASTMASESESRALK 100 ++ DP K+DL+D+A + S LK Sbjct 186 KAY---------DP---KIDLIDLAGVKLTPSHYAYLK 211 Lambda K H a alpha 0.312 0.129 0.366 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 126949807360