bitscore colors: <40, 40-50 , 50-80, 80-200, >200

           BLASTP 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           49,011,213 sequences; 17,563,301,199 total letters



Query= Contig-4_CDS_annotation_glimmer3.pl_2_1

Length=67
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|17535063|ref|NP_497014.1|  Protein K10H10.9                        34.3    3.6
gi|662295446|gb|KEQ08883.1|  hypothetical protein GV67_10210          33.9    6.8
gi|657916845|ref|WP_029618694.1|  hypothetical protein                33.5    7.6
gi|501343059|ref|WP_012374694.1|  permease                            33.5    9.7


>gi|17535063|ref|NP_497014.1| Protein K10H10.9 [Caenorhabditis elegans]
Length=257

 Score = 34.3 bits (77),  Expect = 3.6, Method: Composition-based stats.
 Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 6/45 (13%)

Query  23   VSLALDYRVGCTLFHAVEYVSKHPLVKPCLNKYVIASLSFQYSEL  67
            VSLAL+Y   C   H  E + + P +K C N+      SFQY EL
Sbjct  65   VSLALNYSANCGNAHKKEMIFRTPPIKNCANQ------SFQYDEL  103


>gi|662295446|gb|KEQ08883.1| hypothetical protein GV67_10210 [Rhizobium sp. R1-200B2]
 gi|662296449|gb|KEQ09873.1| hypothetical protein GV68_21230 [Rhizobium sp. R2-400B4]
Length=313

 Score = 33.9 bits (76),  Expect = 6.8, Method: Composition-based stats.
 Identities = 23/63 (37%), Positives = 32/63 (51%), Gaps = 8/63 (13%)

Query  7    VVVFAPKSPGLEHLSAVSLALDYRVGC---TLFHAVEYVSKHPLVKPCLNKYVIASLSFQ  63
            VV      P + HL A+S+   YR+GC   T    +  +SKHPL+ P      +ASLS  
Sbjct  126  VVNIMEAEPLMAHLPALSVVYPYRIGCGEMTRRCDLMMLSKHPLLDPS-----VASLSNV  180

Query  64   YSE  66
            + E
Sbjct  181  FEE  183


>gi|657916845|ref|WP_029618694.1| hypothetical protein [Rhizobium sp. MGL06]
Length=313

 Score = 33.5 bits (75),  Expect = 7.6, Method: Composition-based stats.
 Identities = 23/63 (37%), Positives = 32/63 (51%), Gaps = 8/63 (13%)

Query  7    VVVFAPKSPGLEHLSAVSLALDYRVGC---TLFHAVEYVSKHPLVKPCLNKYVIASLSFQ  63
            VV      P + HL A+S+   YR+GC   T    +  +SKHPL+ P      +ASLS  
Sbjct  126  VVNIMEAEPLMAHLPALSVVYPYRIGCGEMTRRCDLMMLSKHPLLDPS-----VASLSNV  180

Query  64   YSE  66
            + E
Sbjct  181  FEE  183


>gi|501343059|ref|WP_012374694.1| permease [Opitutus terrae]
 gi|182413691|ref|YP_001818757.1| permease [Opitutus terrae PB90-1]
 gi|177840905|gb|ACB75157.1| permease [Opitutus terrae PB90-1]
Length=800

 Score = 33.5 bits (75),  Expect = 9.7, Method: Composition-based stats.
 Identities = 18/44 (41%), Positives = 25/44 (57%), Gaps = 0/44 (0%)

Query  13  KSPGLEHLSAVSLALDYRVGCTLFHAVEYVSKHPLVKPCLNKYV  56
           KSPG   +S V LAL   +  TLF  V++V   PL+ P  ++ V
Sbjct  14  KSPGYTAVSLVILALGIGINTTLFSVVDHVLLQPLIFPKADRLV  57



Lambda      K        H        a         alpha
   0.324    0.137    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 438252188976