bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
49,011,213 sequences; 17,563,301,199 total letters
Query= Contig-3_CDS_annotation_glimmer3.pl_2_2
Length=153
Score E
Sequences producing significant alignments: (Bits) Value
gi|490418710|ref|WP_004291033.1| hypothetical protein 62.0 2e-09
gi|496050830|ref|WP_008775337.1| hypothetical protein 61.2 3e-09
gi|547226429|ref|WP_021963492.1| putative uncharacterized protein 51.2 1e-05
gi|575094359|emb|CDL65741.1| unnamed protein product 44.3 0.004
gi|494822883|ref|WP_007558291.1| hypothetical protein 43.9 0.005
gi|656120129|emb|CDR84667.1| Diaminopimelate epimerase 36.6 4.2
gi|647621961|ref|WP_025895667.1| diaminopimelate epimerase 36.6 4.7
gi|547332801|ref|WP_022063436.1| lipoprotein putative 36.2 7.0
gi|524327838|emb|CDA84148.1| rSC complex Rsc14/Ldb7 subunit supe... 36.2 7.8
gi|156311300|ref|XP_001617761.1| hypothetical protein NEMVEDRAFT... 35.8 8.6
>gi|490418710|ref|WP_004291033.1| hypothetical protein [Bacteroides eggerthii]
gi|217986637|gb|EEC52971.1| hypothetical protein BACEGG_02722 [Bacteroides eggerthii DSM
20697]
Length=155
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/89 (42%), Positives = 57/89 (64%), Gaps = 6/89 (7%)
Query 35 VNKDG--SIAISSDISLIFNQQRLENKLTASELREYIQRYT---PNKSVYTSQLDDDTLL 89
+ DG SI I+SDI ++FNQQRL +KLT S+L EY + P S ++ D+ L
Sbjct 44 IECDGKKSIRITSDIYMLFNQQRL-DKLTRSQLVEYFDNLSVSEPKMSDLRKKMTDEQLC 102
Query 90 NTLKSRHIQSLSEMRSWAEYCMENYDSLI 118
+ +KSR IQ+ SE+ +W++Y M + D++I
Sbjct 103 SFVKSRFIQTPSELMAWSQYLMSSQDAMI 131
>gi|496050830|ref|WP_008775337.1| hypothetical protein [Bacteroides sp. 2_2_4]
gi|229448894|gb|EEO54685.1| hypothetical protein BSCG_01610 [Bacteroides sp. 2_2_4]
Length=154
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/99 (41%), Positives = 59/99 (60%), Gaps = 5/99 (5%)
Query 23 PVQDKLMQLSTFVNKDGSIAISSDISLIFNQQRLENKLTASELREYIQRYT---PNKSVY 79
PV L Q V+ D SI +SSDI ++FNQQRL +KL+ + L EY + P +
Sbjct 34 PVDQFLFQ-EVSVDGDTSIRLSSDIYMLFNQQRL-DKLSQTSLLEYFNNISVTEPRFNEL 91
Query 80 TSQLDDDTLLNTLKSRHIQSLSEMRSWAEYCMENYDSLI 118
S+L D+ L++ +KSR IQS SE+ +W+ Y M + D I
Sbjct 92 RSKLGDEQLISFVKSRFIQSKSELMAWSNYLMNSTDEQI 130
>gi|547226429|ref|WP_021963492.1| putative uncharacterized protein [Prevotella sp. CAG:1185]
gi|524103381|emb|CCY83992.1| putative uncharacterized protein [Prevotella sp. CAG:1185]
Length=152
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 58/102 (57%), Gaps = 7/102 (7%)
Query 23 PVQDKLMQLSTFVN---KDGSIAISSDISLIFNQQRLENKLTASELREYIQRYTPNK--- 76
P+++ + + T+ N K +IA DI ++FNQ RL++ + +++++ TP
Sbjct 29 PIREFMTEKVTYFNGSDKKTAIAYVDDIYMLFNQNRLDS-VGRDTIQKWLDGLTPRSDSL 87
Query 77 SVYTSQLDDDTLLNTLKSRHIQSLSEMRSWAEYCMENYDSLI 118
+ + D+ L+ KSR+IQS SE+ +W+EY NY S++
Sbjct 88 AKLRENVTDEQLMEICKSRYIQSSSELLAWSEYLNANYASIL 129
>gi|575094359|emb|CDL65741.1| unnamed protein product [uncultured bacterium]
Length=156
Score = 44.3 bits (103), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 56/106 (53%), Gaps = 4/106 (4%)
Query 15 FDVLHTKVPVQDKLMQLSTFVNKDGSIAISSDISLIFNQQRLENKLTASELREYIQRYTP 74
+ K PV++ +Q S++I D+ ++FNQQRL+ ++T + L +++ R +
Sbjct 23 LSIFREKSPVENFYIQKHKSKYGCESVSIVDDVYMLFNQQRLD-RMTNAALADWLSRTSR 81
Query 75 NKSVYTS---QLDDDTLLNTLKSRHIQSLSEMRSWAEYCMENYDSL 117
S S ++ D L +KSR+IQS SE+ +++ Y Y L
Sbjct 82 TDSQLASLRSRMSDVQLGAFIKSRYIQSRSELLAYSSYLESQYPEL 127
>gi|494822883|ref|WP_007558291.1| hypothetical protein [Bacteroides plebeius]
gi|198272098|gb|EDY96367.1| hypothetical protein BACPLE_00803 [Bacteroides plebeius DSM 17135]
Length=140
Score = 43.9 bits (102), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/95 (31%), Positives = 52/95 (55%), Gaps = 4/95 (4%)
Query 18 LHTKVPVQDKLMQ-LSTFVNKDGSIAISSDISLIFNQQRLENKLTASELREYIQ--RYTP 74
L PV+D + + T + ++ +DI +I NQ+RL++ +T ++ +Y+ R
Sbjct 7 LRVPSPVEDFYREEVQTPLGSTPAVTYRNDIYMILNQRRLDS-MTLAQFSDYLDHDRSAS 65
Query 75 NKSVYTSQLDDDTLLNTLKSRHIQSLSEMRSWAEY 109
S ++ D+ L +KSR+IQ SE+R+WA Y
Sbjct 66 QLSQMREKMSDEQLHQFVKSRYIQHPSELRAWASY 100
>gi|656120129|emb|CDR84667.1| Diaminopimelate epimerase [Lactobacillus delbrueckii subsp. lactis]
Length=328
Score = 36.6 bits (83), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 21/56 (38%), Positives = 31/56 (55%), Gaps = 2/56 (4%)
Query 49 LIFNQQRLENKLTASELREYIQRYTPNKSVYTSQLDDDTLLNTLKSRHIQSLSEMR 104
I +Q LEN LT +ELR+ Q T +K+ D +L+ +SRH +L +MR
Sbjct 15 FILDQTELENPLTDNELRQLTQTLTDHKTGLLGGADG--ILSVEESRHPGALGKMR 68
>gi|647621961|ref|WP_025895667.1| diaminopimelate epimerase [Lactobacillus delbrueckii]
Length=328
Score = 36.6 bits (83), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 21/56 (38%), Positives = 31/56 (55%), Gaps = 2/56 (4%)
Query 49 LIFNQQRLENKLTASELREYIQRYTPNKSVYTSQLDDDTLLNTLKSRHIQSLSEMR 104
I +Q LEN LT +ELR+ Q T +K+ D +L+ +SRH +L +MR
Sbjct 15 FILDQTELENPLTDNELRQLTQTLTDHKTGLLGGADG--ILSVEESRHPGALGKMR 68
>gi|547332801|ref|WP_022063436.1| lipoprotein putative [Alistipes sp. CAG:157]
gi|524232353|emb|CCZ99560.1| lipoprotein putative [Alistipes sp. CAG:157]
Length=603
Score = 36.2 bits (82), Expect = 7.0, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 2/67 (3%)
Query 11 FNGSFDVLHTKVPVQDKLMQLSTFVNK--DGSIAISSDISLIFNQQRLENKLTASELREY 68
F+G +DVL V L T V + DG+IA+ +S+ F ++ E + + + + E
Sbjct 81 FDGDYDVLLKHVADDTVLADDETVVTRSADGTIAVKDLLSVYFPEEGTETRSSGTNIIEE 140
Query 69 IQRYTPN 75
+QR PN
Sbjct 141 LQRLYPN 147
>gi|524327838|emb|CDA84148.1| rSC complex Rsc14/Ldb7 subunit superfamily [Bacteroides sp. CAG:754]
Length=766
Score = 36.2 bits (82), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 53/104 (51%), Gaps = 5/104 (5%)
Query 17 VLHTKVPVQDKLMQLSTFVNKDGSIAISSDISLIFNQQRLENKLTASELREYIQRYTPNK 76
++++ +P + + +L T+ D +A +++ + Q L ++ A+ +RE +++Y N+
Sbjct 391 LVYSVIPAR-TMQRLYTYTPNDSRVATWLEVADLLEQDTLPDE--AAAIREIVEKYPKNQ 447
Query 77 SVYTSQLDDDTLLNTLKSRHIQSLSEMRSWAEYCMENYDSLIKD 120
+ Q+ NT+ H+ L M+ EY E Y +L K+
Sbjct 448 DLQYRQVAALPYYNTIIKAHLPKLRSMK--CEYTAEIYRALTKE 489
>gi|156311300|ref|XP_001617761.1| hypothetical protein NEMVEDRAFT_v1g225819 [Nematostella vectensis]
gi|156195675|gb|EDO25661.1| predicted protein [Nematostella vectensis]
Length=265
Score = 35.8 bits (81), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 55/110 (50%), Gaps = 11/110 (10%)
Query 12 NGSFDVLHTKVPVQDKLMQLSTFVNKDGSIAISSDISL-IFNQQRLENKLTASELREYIQ 70
NGS D+ H V V D ++ +++ + I++ + L FN ++ A E+ +
Sbjct 4 NGSIDIPH--VAVTDHQIRKRPLTDEEAA-EITAFLGLRCFNNDSVDGVTQARAFLEFYE 60
Query 71 RYTPNKSVYTSQLDDDTLLNTLKSRHIQSLSEMRSW--AEYCMENYDSLI 118
RY PNK + S + LN K++ +++ + R + A Y + NYD +I
Sbjct 61 RYNPNKGLLDSAIG---YLN--KAQKLEAQKQNRDYIRAYYLLNNYDKVI 105
Lambda K H a alpha
0.316 0.130 0.361 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 439486018167