bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
49,011,213 sequences; 17,563,301,199 total letters
Query= Contig-19_CDS_annotation_glimmer3.pl_2_2
Length=109
Score E
Sequences producing significant alignments: (Bits) Value
gi|500601158|ref|WP_011961020.1| 30S ribosomal protein S12 methy... 38.9 0.30
gi|489865657|ref|WP_003769247.1| iron ABC transporter substrate-... 36.6 1.5
gi|493501316|ref|WP_006455829.1| penicillin-binding protein 36.2 2.7
gi|500247653|ref|WP_011907998.1| diacylglycerol kinase 35.4 3.9
gi|655475873|ref|WP_028858700.1| ribosomal protein S12 methylthi... 35.4 4.8
gi|494637511|ref|WP_007395455.1| 30S ribosomal protein S12 methy... 35.4 5.2
gi|502275071|ref|WP_012749042.1| glycine betain transporter subs... 35.0 6.2
gi|402341546|gb|EJU76720.1| siderophore ABC superfamily ATP bind... 34.3 6.8
gi|254672671|emb|CBA06524.1| ferric anguibactin-binding protein 34.7 7.1
gi|488152881|ref|WP_002224089.1| iron ABC transporter substrate-... 34.7 7.1
>gi|500601158|ref|WP_011961020.1| 30S ribosomal protein S12 methylthiotransferase [Psychrobacter
sp. PRwf-1]
gi|148653600|ref|YP_001280693.1| 30S ribosomal protein S12 methylthiotransferase [Psychrobacter
sp. PRwf-1]
gi|238066576|sp|A5WGF2.1|RIMO_PSYWF RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
Short=S12 MTTase; Short=S12 methylthiotransferase; AltName:
Full=Ribosome maturation factor RimO [Psychrobacter sp. PRwf-1]
gi|148572684|gb|ABQ94743.1| SSU ribosomal protein S12P methylthiotransferase [Psychrobacter
sp. PRwf-1]
Length=524
Score = 38.9 bits (89), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 28/98 (29%), Positives = 41/98 (42%), Gaps = 18/98 (18%)
Query 3 KKKKITCPSCFSKDSSSLRDYNPFVDKVVVAHPMSYYLNGGVDLQGISTRKPLPAAFDDA 62
K K+ C KD+ +RD +P V V AH + +ST P+P A D
Sbjct 132 KNGKVIVTGCLGKDAQKIRDMHPAVLAVTGAHAYDEVIT------AVSTHAPMPQAIQDK 185
Query 63 ESIASGDVNVFTDPTVGKLDLMDMASTMASESESRALK 100
++ DP K+DL+D+A + S LK
Sbjct 186 KAY---------DP---KIDLIDLAGVKLTPSHYAYLK 211
>gi|489865657|ref|WP_003769247.1| iron ABC transporter substrate-binding protein [Neisseria sicca]
gi|385692934|gb|EIG23601.1| oligopeptide ABC transporter, oligopeptide-binding protein [Neisseria
sicca VK64]
Length=323
Score = 36.6 bits (83), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/53 (34%), Positives = 30/53 (57%), Gaps = 0/53 (0%)
Query 16 DSSSLRDYNPFVDKVVVAHPMSYYLNGGVDLQGISTRKPLPAAFDDAESIASG 68
D++ +RD N + K ++ P + Y+ G Q I + L AAF+ AE +A+G
Sbjct 269 DNALVRDTNAWKRKQIIVMPAANYIVAGGARQLIQAAEQLKAAFEKAEPVAAG 321
>gi|493501316|ref|WP_006455829.1| penicillin-binding protein [Synechococcus sp. PCC 7335]
gi|196191106|gb|EDX86070.1| penicillin-binding protein, 1A family [Synechococcus sp. PCC
7335]
Length=761
Score = 36.2 bits (82), Expect = 2.7, Method: Composition-based stats.
Identities = 20/41 (49%), Positives = 27/41 (66%), Gaps = 1/41 (2%)
Query 10 PSCFSKDSSSLRDYNPFVDKVVVAHPMS-YYLNGGVDLQGI 49
PS +++S LRDY+PF+ K VVA S +Y + GVD GI
Sbjct 217 PSITHRENSQLRDYSPFLPKAVVASEDSRFYWHLGVDPLGI 257
>gi|500247653|ref|WP_011907998.1| diacylglycerol kinase [Rhodobacter sphaeroides]
gi|146277005|ref|YP_001167164.1| diacylglycerol kinase catalytic subunit [Rhodobacter sphaeroides
ATCC 17025]
gi|145555246|gb|ABP69859.1| diacylglycerol kinase, catalytic region [Rhodobacter sphaeroides
ATCC 17025]
Length=306
Score = 35.4 bits (80), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 20/69 (29%), Positives = 34/69 (49%), Gaps = 8/69 (12%)
Query 28 DKVVVAHPMSYYLNGGVDLQGISTRKPLPAAFDDAESIASGDVNVFTDPTVGKLDLMDMA 87
++ VV P+ + +N L+ ++ D AE +A+GD+ VF P G+L + A
Sbjct 184 EERVVRSPLVFVVNNAFQLEQMN--------LDGAERVAAGDLVVFIAPNTGRLGMFRNA 235
Query 88 STMASESES 96
+A S S
Sbjct 236 VALALGSAS 244
>gi|655475873|ref|WP_028858700.1| ribosomal protein S12 methylthiotransferase [Psychrobacter phenylpyruvicus]
Length=513
Score = 35.4 bits (80), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 39/95 (41%), Gaps = 18/95 (19%)
Query 6 KITCPSCFSKDSSSLRDYNPFVDKVVVAHPMSYYLNGGVDLQGISTRKPLPAAFDDAESI 65
K+ C KD+ +RD +P V V AH + +S P+P A D ++
Sbjct 129 KVIVTGCLGKDAEKIRDMHPAVLAVTGAHAYDEVIT------AVSKHAPMPQAIKDKKAY 182
Query 66 ASGDVNVFTDPTVGKLDLMDMASTMASESESRALK 100
DP K+DL+D+A + S LK
Sbjct 183 ---------DP---KIDLIDLAGVKLTPSHYAYLK 205
>gi|494637511|ref|WP_007395455.1| 30S ribosomal protein S12 methylthiotransferase [Psychrobacter
sp. 1501(2011)]
gi|332970851|gb|EGK09830.1| 2-methylthioadenine synthetase [Psychrobacter sp. 1501(2011)]
Length=511
Score = 35.4 bits (80), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 39/95 (41%), Gaps = 18/95 (19%)
Query 6 KITCPSCFSKDSSSLRDYNPFVDKVVVAHPMSYYLNGGVDLQGISTRKPLPAAFDDAESI 65
K+ C KD+ +RD +P V V AH + +S P+P A D ++
Sbjct 127 KVIVTGCLGKDAEKIRDMHPAVLAVTGAHAYDEVIT------AVSKHAPMPQAIKDKKA- 179
Query 66 ASGDVNVFTDPTVGKLDLMDMASTMASESESRALK 100
DP K+DL+D+A + S LK
Sbjct 180 --------YDP---KIDLIDLAGVKLTPSHYAYLK 203
>gi|502275071|ref|WP_012749042.1| glycine betain transporter substrate-binding protein [Geobacillus
sp. WCH70]
gi|239825867|ref|YP_002948491.1| glycine betain transporter substrate-binding protein [Geobacillus
sp. WCH70]
gi|239806160|gb|ACS23225.1| Substrate-binding region of ABC-type glycine betaine transport
system [Geobacillus sp. WCH70]
Length=300
Score = 35.0 bits (79), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query 26 FVDKVVVAHPMSYYLNGGVDLQGISTRKPLPAAFDDAESIASGDVNVFTDPT-VGKLDLM 84
F ++V++AH ++ YL DL + + L AF +++ GDV+++ + T G L+++
Sbjct 38 FTEQVILAHLLAEYLKANTDLD-VEMKDSLGGAFVLQQAMEKGDVDLYVEYTGTGHLNIL 96
>gi|402341546|gb|EJU76720.1| siderophore ABC superfamily ATP binding cassette transporter,
binding protein [Neisseria meningitidis NM3001]
Length=155
Score = 34.3 bits (77), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 29/53 (55%), Gaps = 0/53 (0%)
Query 16 DSSSLRDYNPFVDKVVVAHPMSYYLNGGVDLQGISTRKPLPAAFDDAESIASG 68
D++ +R N + K ++ P + Y+ G Q I + L AAF+ AE +A+G
Sbjct 101 DNALVRGTNAWKRKQIIVMPAANYIVAGGARQLIQAAEQLKAAFEKAEPVAAG 153
>gi|254672671|emb|CBA06524.1| ferric anguibactin-binding protein [Neisseria meningitidis alpha275]
Length=321
Score = 34.7 bits (78), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 29/53 (55%), Gaps = 0/53 (0%)
Query 16 DSSSLRDYNPFVDKVVVAHPMSYYLNGGVDLQGISTRKPLPAAFDDAESIASG 68
D++ +R N + K ++ P + Y+ G Q I + L AAF+ AE +A+G
Sbjct 267 DNALVRGTNAWKRKQIIVMPAANYIVAGGSRQLIQAAEQLKAAFEKAEPVAAG 319
>gi|488152881|ref|WP_002224089.1| iron ABC transporter substrate-binding protein [Neisseria meningitidis]
gi|254804297|ref|YP_003082518.1| periplasmic binding protein, ABC transporter [Neisseria meningitidis
alpha14]
gi|385329126|ref|YP_005883429.1| putative ABC transporter, periplasmic solute- binding protein
[Neisseria meningitidis alpha710]
gi|385341276|ref|YP_005895147.1| putative ABC transporter, periplasmic iron-binding protein [Neisseria
meningitidis M01-240149]
gi|385856573|ref|YP_005903085.1| putative ABC transporter, periplasmic iron-binding protein [Neisseria
meningitidis NZ-05/33]
gi|254667839|emb|CBA03850.1| periplasmic binding protein, ABC transporter [Neisseria meningitidis
alpha14]
gi|308389978|gb|ADO32298.1| putative ABC transporter, periplasmic solute- binding protein
[Neisseria meningitidis alpha710]
gi|325135474|gb|EGC58092.1| putative ABC transporter, periplasmic iron-binding protein [Neisseria
meningitidis M0579]
gi|325201482|gb|ADY96936.1| putative ABC transporter, periplasmic iron-binding protein [Neisseria
meningitidis M01-240149]
gi|325207462|gb|ADZ02914.1| putative ABC transporter, periplasmic iron-binding protein [Neisseria
meningitidis NZ-05/33]
gi|402315556|gb|EJU51119.1| ferric enterobactin transporter binding protein [Neisseria meningitidis
93003]
gi|432201237|gb|ELK57320.1| periplasmic binding family protein [Neisseria meningitidis 98080]
gi|432221049|gb|ELK76864.1| periplasmic binding family protein [Neisseria meningitidis M13255]
gi|432271789|gb|ELL26911.1| periplasmic binding family protein [Neisseria meningitidis 77221]
gi|485358455|gb|EOC19384.1| periplasmic binding family protein [Neisseria meningitidis M13265]
gi|485360020|gb|EOC20812.1| periplasmic binding family protein [Neisseria meningitidis M13265]
gi|530898507|gb|EQC97306.1| periplasmic binding family protein [Neisseria meningitidis 96037]
gi|530898589|gb|EQC97385.1| periplasmic binding family protein [Neisseria meningitidis 96037]
gi|530904608|gb|EQD03026.1| periplasmic binding family protein [Neisseria meningitidis NM3139]
gi|530905305|gb|EQD03686.1| periplasmic binding family protein [Neisseria meningitidis NM045]
gi|530906337|gb|EQD04643.1| periplasmic binding family protein [Neisseria meningitidis NM151]
gi|530910170|gb|EQD08257.1| periplasmic binding family protein [Neisseria meningitidis NM003]
gi|530913587|gb|EQD11462.1| periplasmic binding family protein [Neisseria meningitidis NM0552]
gi|530921012|gb|EQD18443.1| periplasmic binding family protein [Neisseria meningitidis NM3230]
gi|530922060|gb|EQD19430.1| periplasmic binding family protein [Neisseria meningitidis NM2866]
Length=321
Score = 34.7 bits (78), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 29/53 (55%), Gaps = 0/53 (0%)
Query 16 DSSSLRDYNPFVDKVVVAHPMSYYLNGGVDLQGISTRKPLPAAFDDAESIASG 68
D++ +R N + K ++ P + Y+ G Q I + L AAF+ AE +A+G
Sbjct 267 DNALVRGTNAWKRKQIIVMPAANYIVAGGSRQLIQAAEQLKAAFEKAEPVAAG 319
Lambda K H a alpha
0.312 0.129 0.366 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 441262009536