bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: Microviridae_proteins.fasta
575 sequences; 147,441 total letters
Query= Contig-34_CDS_annotation_glimmer3.pl_2_2
Length=59
Score E
Sequences producing significant alignments: (Bits) Value
Alpavirinae_Human_feces_D_031_Microviridae_AG0421_hypothetical.... 21.6 0.59
Alpavirinae_Human_feces_D_008_Microviridae_AG099_hypothetical.p... 20.8 1.4
unnamed protein product 19.6 3.3
Pichovirinae_59_Coral_002_Microviridae_AG0339_putative.VP1 19.2 4.4
Pichovirinae_59_Coral_002_Microviridae_AG0342_hypothetical.prot... 19.2 4.8
unnamed protein product 18.9 5.1
Microvirus_gi|242346750|ref|YP_002985212.1|_gpF_[Enterobacteria... 18.5 7.9
Alpavirinae_Human_gut_32_015_Microviridae_AG0213_putative.VP1 18.5 9.2
> Alpavirinae_Human_feces_D_031_Microviridae_AG0421_hypothetical.protein.BACEGG.02723
Length=418
Score = 21.6 bits (44), Expect = 0.59, Method: Composition-based stats.
Identities = 14/36 (39%), Positives = 16/36 (44%), Gaps = 1/36 (3%)
Query 11 DGTKGAIFGGSSYTTGDSLQKASSAP-VPAYDGYVA 45
D G+ G S S AS P +PAY GY A
Sbjct 104 DPGSGSTSGAQSSPGSGSSATASHTPSLPAYTGYAA 139
> Alpavirinae_Human_feces_D_008_Microviridae_AG099_hypothetical.protein.BACEGG.02723
Length=418
Score = 20.8 bits (42), Expect = 1.4, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 15/36 (42%), Gaps = 1/36 (3%)
Query 11 DGTKGAIFGGSSYTTGDSLQKASSAP-VPAYDGYVA 45
D + G S S AS P +PAY GY A
Sbjct 104 DAGSASTSGAQSSPGSGSQATASHTPSLPAYTGYAA 139
> unnamed protein product
Length=130
Score = 19.6 bits (39), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 9/36 (25%), Positives = 19/36 (53%), Gaps = 0/36 (0%)
Query 11 DGTKGAIFGGSSYTTGDSLQKASSAPVPAYDGYVAP 46
DGT+ ++ + + ++++ +APV GY P
Sbjct 28 DGTEEFLYCPNLIDVLEIIRESVNAPVIINSGYRTP 63
> Pichovirinae_59_Coral_002_Microviridae_AG0339_putative.VP1
Length=522
Score = 19.2 bits (38), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 21/46 (46%), Gaps = 2/46 (4%)
Query 2 HFSVLKTAADGTKGAIFGGSS--YTTGDSLQKASSAPVPAYDGYVA 45
HF V + A + GGS+ T + LQ +++ P G +A
Sbjct 311 HFGVRSSDARLQRPEFLGGSATPITISEVLQTSANNTEPTPQGNMA 356
> Pichovirinae_59_Coral_002_Microviridae_AG0342_hypothetical.protein.BACEGG.02723
Length=233
Score = 19.2 bits (38), Expect = 4.8, Method: Composition-based stats.
Identities = 8/22 (36%), Positives = 11/22 (50%), Gaps = 0/22 (0%)
Query 17 IFGGSSYTTGDSLQKASSAPVP 38
I+G TG + A+S P P
Sbjct 64 IYGSGQTNTGVAGSIAASKPAP 85
> unnamed protein product
Length=128
Score = 18.9 bits (37), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 9/36 (25%), Positives = 17/36 (47%), Gaps = 0/36 (0%)
Query 11 DGTKGAIFGGSSYTTGDSLQKASSAPVPAYDGYVAP 46
DGTK ++ +++++ + PV GY P
Sbjct 27 DGTKEFLWAPELLGILETIREHFNEPVIINSGYRTP 62
> Microvirus_gi|242346750|ref|YP_002985212.1|_gpF_[Enterobacteria_phage_St-1]
Length=431
Score = 18.5 bits (36), Expect = 7.9, Method: Composition-based stats.
Identities = 7/9 (78%), Positives = 8/9 (89%), Gaps = 0/9 (0%)
Query 24 TTGDSLQKA 32
T+GD LQKA
Sbjct 379 TSGDDLQKA 387
> Alpavirinae_Human_gut_32_015_Microviridae_AG0213_putative.VP1
Length=653
Score = 18.5 bits (36), Expect = 9.2, Method: Composition-based stats.
Identities = 8/24 (33%), Positives = 13/24 (54%), Gaps = 0/24 (0%)
Query 19 GGSSYTTGDSLQKASSAPVPAYDG 42
GG G+ +K +S+ +P Y G
Sbjct 121 GGGDSNRGNFEKKTNSSSLPFYLG 144
Lambda K H a alpha
0.317 0.130 0.399 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 3629248