bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: Microviridae_proteins.fasta
575 sequences; 147,441 total letters
Query= Contig-19_CDS_annotation_glimmer3.pl_2_2
Length=109
Score E
Sequences producing significant alignments: (Bits) Value
Alpavirinae_Human_gut_30_017_Microviridae_AG0203_putative.VP4 21.6 2.1
Alpavirinae_Human_feces_A_047_Microviridae_AG0311_putative.VP1 20.8 4.9
Alpavirinae_Human_feces_C_029_Microviridae_AG0109_putative.VP1 20.4 5.2
Alpavirinae_Human_feces_C_043_Microviridae_AG0322_putative.VP1 20.4 6.5
Alpavirinae_Human_feces_C_016_Microviridae_AG0274_putative.VP1 20.0 7.4
Pichovirinae_Bourget_523_Microviridae_AG0335_putative.VP4 20.0 8.3
Alpavirinae_Human_gut_31_037_Microviridae_AG0297_putative.VP1 20.0 8.7
> Alpavirinae_Human_gut_30_017_Microviridae_AG0203_putative.VP4
Length=363
Score = 21.6 bits (44), Expect = 2.1, Method: Composition-based stats.
Identities = 10/20 (50%), Positives = 12/20 (60%), Gaps = 5/20 (25%)
Query 12 CFSKDSSSLRDYNPFVDKVV 31
CF DSS NPF +K+V
Sbjct 347 CFGIDSS-----NPFFNKIV 361
> Alpavirinae_Human_feces_A_047_Microviridae_AG0311_putative.VP1
Length=637
Score = 20.8 bits (42), Expect = 4.9, Method: Composition-based stats.
Identities = 8/13 (62%), Positives = 9/13 (69%), Gaps = 0/13 (0%)
Query 69 DVNVFTDPTVGKL 81
+ NV T PTVG L
Sbjct 62 EANVLTHPTVGPL 74
> Alpavirinae_Human_feces_C_029_Microviridae_AG0109_putative.VP1
Length=640
Score = 20.4 bits (41), Expect = 5.2, Method: Composition-based stats.
Identities = 8/13 (62%), Positives = 9/13 (69%), Gaps = 0/13 (0%)
Query 69 DVNVFTDPTVGKL 81
+ NV T PTVG L
Sbjct 62 EANVLTHPTVGPL 74
> Alpavirinae_Human_feces_C_043_Microviridae_AG0322_putative.VP1
Length=602
Score = 20.4 bits (41), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 15/27 (56%), Gaps = 3/27 (11%)
Query 33 AHPMSYYLNGGVDLQGISTRK---PLP 56
A P+ YL G DLQ +ST P+P
Sbjct 441 ATPVLDYLRSGQDLQLLSTLATDIPIP 467
> Alpavirinae_Human_feces_C_016_Microviridae_AG0274_putative.VP1
Length=641
Score = 20.0 bits (40), Expect = 7.4, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 16/26 (62%), Gaps = 2/26 (8%)
Query 26 FVDKVVVAHPMSYYLNGGVDLQGIST 51
FVD+ ++A SYY G DL+ S+
Sbjct 607 FVDQTLMAGNFSYY--GTFDLKVTSS 630
> Pichovirinae_Bourget_523_Microviridae_AG0335_putative.VP4
Length=291
Score = 20.0 bits (40), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 5/10 (50%), Positives = 8/10 (80%), Gaps = 0/10 (0%)
Query 9 CPSCFSKDSS 18
CP+C S+ +S
Sbjct 37 CPACLSRRTS 46
> Alpavirinae_Human_gut_31_037_Microviridae_AG0297_putative.VP1
Length=668
Score = 20.0 bits (40), Expect = 8.7, Method: Composition-based stats.
Identities = 8/11 (73%), Positives = 8/11 (73%), Gaps = 0/11 (0%)
Query 71 NVFTDPTVGKL 81
NV T PTVG L
Sbjct 65 NVLTHPTVGPL 75
Lambda K H a alpha
0.312 0.129 0.366 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 5818641