bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: Microviridae_proteins.fasta
575 sequences; 147,441 total letters
Query= Contig-12_CDS_annotation_glimmer3.pl_2_3
Length=86
Score E
Sequences producing significant alignments: (Bits) Value
Alpavirinae_Human_feces_B_020_Microviridae_AG0354_hypothetical.... 99.0 7e-30
Alpavirinae_Human_feces_C_029_Microviridae_AG0110_hypothetical.... 37.4 7e-07
Alpavirinae_Human_feces_A_048_Microviridae_AG088_hypothetical.p... 35.8 2e-06
Alpavirinae_Human_feces_B_007_Microviridae_AG068_putative.VP1 22.3 0.91
Alpavirinae_Human_feces_D_015_Microviridae_AG019_putative.VP1 21.9 1.1
Gokush_Bourget_164_Microviridae_AG044_putative.VP1 20.8 3.3
Gokush_Bourget_245_Microviridae_AG080_putative.VP4 20.4 3.6
Alpavirinae_Human_feces_A_047_Microviridae_AG0315_putative.VP2 20.4 3.6
Alpavirinae_Human_feces_B_021_Microviridae_AG0370_hypothetical.... 20.4 4.3
Alpavirinae_Human_feces_A_048_Microviridae_AG090_hypothetical.p... 20.0 4.5
> Alpavirinae_Human_feces_B_020_Microviridae_AG0354_hypothetical.protein
Length=80
Score = 99.0 bits (245), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 55/75 (73%), Positives = 65/75 (87%), Gaps = 0/75 (0%)
Query 11 IVNSNKFNTFKAFKRWLWYNLHTGEIIEGSQIWEDtiyktykikktERRLIVETTYDLEQ 70
+ N+ +F TFK FKRWLW+NLHTGE +EG QIWEDTI+K+Y IKKTERRL+VE TYDLE+
Sbjct 1 MANNKRFTTFKTFKRWLWHNLHTGETLEGFQIWEDTIFKSYNIKKTERRLLVEITYDLEK 60
Query 71 EQKKYFENLQLKLFD 85
QK+YFENLQL LFD
Sbjct 61 SQKEYFENLQLNLFD 75
> Alpavirinae_Human_feces_C_029_Microviridae_AG0110_hypothetical.protein
Length=54
Score = 37.4 bits (85), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 36/54 (67%), Gaps = 0/54 (0%)
Query 31 LHTGEIIEGSQIWEDtiyktykikktERRLIVETTYDLEQEQKKYFENLQLKLF 84
+ GE+ +G +I+EDT+ K Y + + ER+LI E TYD + E K + + QLKLF
Sbjct 1 MKPGEVTQGFEIFEDTVIKEYNLNRKERKLICEKTYDKDLEDLKKWNHKQLKLF 54
> Alpavirinae_Human_feces_A_048_Microviridae_AG088_hypothetical.protein
Length=54
Score = 35.8 bits (81), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 34/51 (67%), Gaps = 0/51 (0%)
Query 33 TGEIIEGSQIWEDtiyktykikktERRLIVETTYDLEQEQKKYFENLQLKL 83
GE G +I+EDTI K Y + + ERRLI+E TYD +++ ++ N QLKL
Sbjct 3 PGECTNGFEIFEDTIIKEYNLNRKERRLIIEKTYDEQKDLLRHVLNQQLKL 53
> Alpavirinae_Human_feces_B_007_Microviridae_AG068_putative.VP1
Length=780
Score = 22.3 bits (46), Expect = 0.91, Method: Composition-based stats.
Identities = 12/32 (38%), Positives = 17/32 (53%), Gaps = 4/32 (13%)
Query 12 VNSNKFNTFKAFKRWLWYNLHTG----EIIEG 39
++ N F A++R+L N G EIIEG
Sbjct 528 ISINDFRNVNAYQRYLELNQFRGFSYKEIIEG 559
> Alpavirinae_Human_feces_D_015_Microviridae_AG019_putative.VP1
Length=584
Score = 21.9 bits (45), Expect = 1.1, Method: Composition-based stats.
Identities = 7/32 (22%), Positives = 15/32 (47%), Gaps = 0/32 (0%)
Query 1 MKKRQIKTIWIVNSNKFNTFKAFKRWLWYNLH 32
+K++ VN++ + + + W W LH
Sbjct 49 LKEQHFTRTQPVNTSAYTRVREYYDWFWCPLH 80
> Gokush_Bourget_164_Microviridae_AG044_putative.VP1
Length=540
Score = 20.8 bits (42), Expect = 3.3, Method: Composition-based stats.
Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query 7 KTIWIVNSNK-FNTFKAFKRWLWYNLHTGEI 36
K I++ SN N F +RW Y + EI
Sbjct 431 KEIYVTGSNSDNNVFGYQERWAEYRYNPSEI 461
> Gokush_Bourget_245_Microviridae_AG080_putative.VP4
Length=282
Score = 20.4 bits (41), Expect = 3.6, Method: Composition-based stats.
Identities = 10/16 (63%), Positives = 13/16 (81%), Gaps = 1/16 (6%)
Query 67 DLEQEQKKYFENLQLK 82
DLE EQK+Y ENL ++
Sbjct 249 DLEVEQKRY-ENLPVR 263
> Alpavirinae_Human_feces_A_047_Microviridae_AG0315_putative.VP2
Length=325
Score = 20.4 bits (41), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 6/17 (35%), Positives = 10/17 (59%), Gaps = 0/17 (0%)
Query 23 FKRWLWYNLHTGEIIEG 39
K W++ +H G+ I G
Sbjct 263 IKDWIYEGIHAGKEISG 279
> Alpavirinae_Human_feces_B_021_Microviridae_AG0370_hypothetical.protein.BACPLE.00802
Length=333
Score = 20.4 bits (41), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 6/17 (35%), Positives = 10/17 (59%), Gaps = 0/17 (0%)
Query 23 FKRWLWYNLHTGEIIEG 39
K W++ +H G+ I G
Sbjct 271 IKDWIYEGVHAGKEISG 287
> Alpavirinae_Human_feces_A_048_Microviridae_AG090_hypothetical.protein.BACPLE.00802
Length=333
Score = 20.0 bits (40), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 6/17 (35%), Positives = 10/17 (59%), Gaps = 0/17 (0%)
Query 23 FKRWLWYNLHTGEIIEG 39
K W++ +H G+ I G
Sbjct 271 IKDWIYEGVHAGKEISG 287
Lambda K H a alpha
0.321 0.136 0.424 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 3724512