bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: Microviridae_proteins.fasta
575 sequences; 147,441 total letters
Query= Contig-11_CDS_annotation_glimmer3.pl_2_6
Length=49
Score E
Sequences producing significant alignments: (Bits) Value
Alpavirinae_Human_gut_31_037_Microviridae_AG0302_hypothetical.p... 22.7 0.098
Alpavirinae_Human_feces_B_020_Microviridae_AG0348_hypothetical.... 19.6 1.7
Alpavirinae_Human_gut_30_017_Microviridae_AG0205_putative.VP1 19.6 1.8
Gokush_Human_feces_A_029_Microviridae_AG0226_putative.VP1 19.2 2.8
Alpavirinae_Human_feces_B_023_Microviridae_AG0140_putative.VP2 19.2 3.4
Gokush_gi|19387569|ref|NP_598320.1|_capsid_protein_[Spiroplasma... 18.5 6.4
Alpavirinae_Human_feces_D_015_Microviridae_AG018_hypothetical.p... 17.7 9.5
Gokush_Human_feces_A_020_Microviridae_AG0263_putative.VP2 17.7 9.6
> Alpavirinae_Human_gut_31_037_Microviridae_AG0302_hypothetical.protein
Length=65
Score = 22.7 bits (47), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 9/21 (43%), Positives = 9/21 (43%), Gaps = 0/21 (0%)
Query 1 MGGNYPSYQYGNHCYNYDLMC 21
M G S Q G C N D C
Sbjct 42 MNGEITSVQKGEECENEDQGC 62
> Alpavirinae_Human_feces_B_020_Microviridae_AG0348_hypothetical.protein
Length=81
Score = 19.6 bits (39), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 6/10 (60%), Positives = 9/10 (90%), Gaps = 0/10 (0%)
Query 16 NYDLMCAVVY 25
N+DL+ A+VY
Sbjct 47 NWDLVSALVY 56
> Alpavirinae_Human_gut_30_017_Microviridae_AG0205_putative.VP1
Length=647
Score = 19.6 bits (39), Expect = 1.8, Method: Composition-based stats.
Identities = 7/9 (78%), Positives = 7/9 (78%), Gaps = 0/9 (0%)
Query 2 GGNYPSYQY 10
GGNY SY Y
Sbjct 111 GGNYTSYMY 119
> Gokush_Human_feces_A_029_Microviridae_AG0226_putative.VP1
Length=470
Score = 19.2 bits (38), Expect = 2.8, Method: Composition-based stats.
Identities = 7/11 (64%), Positives = 7/11 (64%), Gaps = 0/11 (0%)
Query 2 GGNYPSYQYGN 12
GG YP Y GN
Sbjct 129 GGTYPVYGDGN 139
> Alpavirinae_Human_feces_B_023_Microviridae_AG0140_putative.VP2
Length=295
Score = 19.2 bits (38), Expect = 3.4, Method: Composition-based stats.
Identities = 8/19 (42%), Positives = 11/19 (58%), Gaps = 0/19 (0%)
Query 24 VYNEPIRKQKQSKLNAKDR 42
VY+E + K KQ+K R
Sbjct 230 VYHEQVEKAKQAKNETAQR 248
> Gokush_gi|19387569|ref|NP_598320.1|_capsid_protein_[Spiroplasma_phage_4]
Length=553
Score = 18.5 bits (36), Expect = 6.4, Method: Composition-based stats.
Identities = 7/10 (70%), Positives = 9/10 (90%), Gaps = 0/10 (0%)
Query 31 KQKQSKLNAK 40
K+K SKLNA+
Sbjct 2 KKKMSKLNAR 11
> Alpavirinae_Human_feces_D_015_Microviridae_AG018_hypothetical.protein.BACEGG.02723
Length=427
Score = 17.7 bits (34), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 10/44 (23%), Positives = 21/44 (48%), Gaps = 12/44 (27%)
Query 9 QYGNHCYNYDLMCA------------VVYNEPIRKQKQSKLNAK 40
Q+ N ++ +L+ A + N+ + +Q+Q+ LN K
Sbjct 219 QWANQVWSNNLLRANVANSLLDAESKTILNKYLDQQQQADLNVK 262
> Gokush_Human_feces_A_020_Microviridae_AG0263_putative.VP2
Length=300
Score = 17.7 bits (34), Expect = 9.6, Method: Composition-based stats.
Identities = 6/11 (55%), Positives = 8/11 (73%), Gaps = 0/11 (0%)
Query 2 GGNYPSYQYGN 12
GGN ++ YGN
Sbjct 58 GGNSSNWSYGN 68
Lambda K H a alpha
0.315 0.132 0.408 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 3639357