bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: all_orgs
14,240,465 sequences; 5,121,972,263 total letters
Query= Contig-6_CDS_annotation_glimmer3.pl_2_2
Length=317
Score E
Sequences producing significant alignments: (Bits) Value
sri:SELR_11130 hypothetical protein 41.6 0.12
cay:CEA_G2678 gatB; aspartyl/glutamyl-tRNA amidotransferase su... 39.7 0.82
cae:SMB_G2704 gatB1; aspartyl/glutamyl-tRNA amidotransferase s... 39.7 0.82
cac:CA_C2669 gatB; aspartyl/glutamyl-tRNA amidotransferase sub... 39.7 0.82
dsf:UWK_01112 glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) ami... 37.4 3.5
cpas:Clopa_1451 glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) a... 37.0 4.7
cbj:H04402_03351 aspartyl-tRNA(Asn) amidotransferase subunit B... 36.6 6.2
cbm:CBF_3417 glutamyl-tRNA(Gln) amidotransferase subunit B (EC... 36.6 6.2
cbf:CLI_3436 gatB; aspartyl/glutamyl-tRNA amidotransferase sub... 36.6 6.2
cby:CLM_3699 gatB; aspartyl/glutamyl-tRNA amidotransferase sub... 36.6 6.6
ccp:CHC_T00001072001 hypothetical protein 36.2 8.5
> sri:SELR_11130 hypothetical protein
Length=288
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Query 91 TIKETKINGEYDNLIATVALRKFLER---CRKETG-KSIKHWCITELGEENGRIHIHGIF 146
T+ N D +A A+ ++ R R + G S+++ C+TE G NGRIH H I
Sbjct 78 TVTYDDENRPADLKMAMKAVENYIRRLNYTRSKAGLSSVRYVCVTEEGATNGRIHHHFIM 137
Query 147 FGENINQVIQKNWKYGF 163
G+ ++K W G+
Sbjct 138 DGDLDRDTVEKRWGLGY 154
> cay:CEA_G2678 gatB; aspartyl/glutamyl-tRNA amidotransferase
subunit B
Length=476
Score = 39.7 bits (91), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 44/78 (56%), Gaps = 9/78 (12%)
Query 65 GEFLTLTIDNDWYKKLEKEIPKLP----KDTIKETKINGEYDN--LIATVALRKFLERCR 118
G+ +TL ID++W + + K IP+LP + IKE I +YD L T+++ F E+
Sbjct 274 GDLVTLNIDDEWIESIRKTIPELPYQKRERFIKEFGI-PKYDASVLTLTMSMADFFEKTA 332
Query 119 KETG--KSIKHWCITELG 134
K +G KS +W + ++
Sbjct 333 KISGDAKSASNWLMGDIS 350
> cae:SMB_G2704 gatB1; aspartyl/glutamyl-tRNA amidotransferase
subunit B
Length=476
Score = 39.7 bits (91), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 44/78 (56%), Gaps = 9/78 (12%)
Query 65 GEFLTLTIDNDWYKKLEKEIPKLP----KDTIKETKINGEYDN--LIATVALRKFLERCR 118
G+ +TL ID++W + + K IP+LP + IKE I +YD L T+++ F E+
Sbjct 274 GDLVTLNIDDEWIESIRKTIPELPYQKRERFIKEFGI-PKYDASVLTLTMSMADFFEKTA 332
Query 119 KETG--KSIKHWCITELG 134
K +G KS +W + ++
Sbjct 333 KISGDAKSASNWLMGDIS 350
> cac:CA_C2669 gatB; aspartyl/glutamyl-tRNA amidotransferase subunit
B
Length=476
Score = 39.7 bits (91), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 44/78 (56%), Gaps = 9/78 (12%)
Query 65 GEFLTLTIDNDWYKKLEKEIPKLP----KDTIKETKINGEYDN--LIATVALRKFLERCR 118
G+ +TL ID++W + + K IP+LP + IKE I +YD L T+++ F E+
Sbjct 274 GDLVTLNIDDEWIESIRKTIPELPYQKRERFIKEFGI-PKYDASVLTLTMSMADFFEKTA 332
Query 119 KETG--KSIKHWCITELG 134
K +G KS +W + ++
Sbjct 333 KISGDAKSASNWLMGDIS 350
> dsf:UWK_01112 glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase,
B subunit (EC:6.3.5.-)
Length=474
Score = 37.4 bits (85), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 40/76 (53%), Gaps = 9/76 (12%)
Query 66 EFLTLTIDNDWYKKLEKEIPKLPKDTIKETKIN----GEYDNLIATVA--LRKFLERCRK 119
+ + + ID W +++ +P+LP D KE +N EYD +I T + L + E K
Sbjct 276 DLIPVVIDESWIEEIRSTLPELP-DARKERFVNEYELPEYDAVILTASRDLADYFEEAVK 334
Query 120 ETGKS--IKHWCITEL 133
GK+ + +W +TE+
Sbjct 335 NCGKAKKVSNWIMTEM 350
> cpas:Clopa_1451 glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn)
amidotransferase, B subunit
Length=476
Score = 37.0 bits (84), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 46/79 (58%), Gaps = 9/79 (11%)
Query 64 HGEFLTLTIDNDWYKKLEKEIPKLP--KDT--IKETKINGEYDN--LIATVALRKFLERC 117
G+ +TL I+++W +++ K IP+LP K+T +K+ KI +YD L T+++ F E+
Sbjct 273 EGDLVTLNIEDEWIEEIRKTIPELPYEKETRFVKQFKI-PKYDAGVLTLTMSMADFFEKA 331
Query 118 --RKETGKSIKHWCITELG 134
E K+ +W + ++
Sbjct 332 ALASEDAKAASNWLMGDIS 350
> cbj:H04402_03351 aspartyl-tRNA(Asn) amidotransferase subunit
B (EC:6.3.5.6 6.3.5.7)
Length=476
Score = 36.6 bits (83), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 21/79 (27%), Positives = 43/79 (54%), Gaps = 9/79 (11%)
Query 64 HGEFLTLTIDNDWYKKLEKEIPKLPKDT----IKETKINGEYDNLIATVA--LRKFLERC 117
G+ +TL I ++W +++ K IP+LP + + E +I +YD ++ T+ + KF E
Sbjct 273 EGDLVTLNISDEWIEEVRKTIPELPHEKAERFVNEFRI-PKYDAMVLTLTMDMAKFFEET 331
Query 118 --RKETGKSIKHWCITELG 134
+ E K+ +W + ++
Sbjct 332 ALKSEDAKATSNWLMGDIS 350
> cbm:CBF_3417 glutamyl-tRNA(Gln) amidotransferase subunit B (EC:6.3.5.-)
Length=476
Score = 36.6 bits (83), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 21/79 (27%), Positives = 43/79 (54%), Gaps = 9/79 (11%)
Query 64 HGEFLTLTIDNDWYKKLEKEIPKLPKDT----IKETKINGEYDNLIATVA--LRKFLERC 117
G+ +TL I ++W +++ K IP+LP + + E +I +YD ++ T+ + KF E
Sbjct 273 EGDLVTLNISDEWIEEVRKTIPELPHEKAERFVNEFRI-PKYDAMVLTLTMDMAKFFEET 331
Query 118 --RKETGKSIKHWCITELG 134
+ E K+ +W + ++
Sbjct 332 ALKSEDAKATSNWLMGDIS 350
> cbf:CLI_3436 gatB; aspartyl/glutamyl-tRNA amidotransferase subunit
B (EC:6.3.5.-)
Length=476
Score = 36.6 bits (83), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 21/79 (27%), Positives = 43/79 (54%), Gaps = 9/79 (11%)
Query 64 HGEFLTLTIDNDWYKKLEKEIPKLPKDT----IKETKINGEYDNLIATVA--LRKFLERC 117
G+ +TL I ++W +++ K IP+LP + + E +I +YD ++ T+ + KF E
Sbjct 273 EGDLVTLNISDEWIEEVRKTIPELPHEKAERFVNEFRI-PKYDAMVLTLTMDMAKFFEET 331
Query 118 --RKETGKSIKHWCITELG 134
+ E K+ +W + ++
Sbjct 332 ALKSEDAKATSNWLMGDIS 350
> cby:CLM_3699 gatB; aspartyl/glutamyl-tRNA amidotransferase subunit
B (EC:6.3.5.-)
Length=476
Score = 36.6 bits (83), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 21/79 (27%), Positives = 43/79 (54%), Gaps = 9/79 (11%)
Query 64 HGEFLTLTIDNDWYKKLEKEIPKLPKDT----IKETKINGEYDNLIATVA--LRKFLERC 117
G+ +TL I ++W +++ K IP+LP + + E +I +YD ++ T+ + KF E
Sbjct 273 EGDLVTLNISDEWIEEVRKTIPELPHEKAERFVNEFRI-PKYDAMVLTLTMDMAKFFEET 331
Query 118 --RKETGKSIKHWCITELG 134
+ E K+ +W + ++
Sbjct 332 TLKSEDAKATSNWLMGDIS 350
> ccp:CHC_T00001072001 hypothetical protein
Length=391
Score = 36.2 bits (82), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 45/107 (42%), Gaps = 14/107 (13%)
Query 32 LYIPAACGECYECRKKKQ--------REYQIRLQEEIRHTHGEFLTLTIDNDWYKKLEKE 83
L+ A E + + K + +R++EEI H GE + + ID +
Sbjct 109 LFTKIAVSEIFSLKMSKTETLTQALGKSIGVRIKEEIEHIEGEVVEIQIDMPLPRSSAAR 168
Query 84 IPKLPKDTIKETKINGEYDNLIATVALRKFLERCRKETGKSIKHWCI 130
+ K K T+K T+I YD + T K ++ RKET S I
Sbjct 169 MAKSGKLTLKNTEIERVYD--LGT----KMIDSLRKETVTSFDAITI 209
Lambda K H a alpha
0.318 0.138 0.423 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 559373477784