bitscore colors: <40, 40-50 , 50-80, 80-200, >200

           BLASTP 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: all_orgs
           14,240,465 sequences; 5,121,972,263 total letters





Query= Contig-4_CDS_annotation_glimmer3.pl_2_7

Length=61
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  ptq:P700755_001428  putative nuclease, PIN_SF superfamily protein   36.2    0.16
  zga:zobellia_3240  hypothetical protein                             34.7    0.62
  vsp:VS_II0460  hypothetical protein                                 34.3    1.5
  vvm:VVMO6_03617  efflux (PET) family inner membrane protein YccS    33.1    3.6
  vvl:VV93_v1c36290  efflux (PET) family inner membrane protein YccS  33.1    3.6
  vvy:VVA0628  hypothetical protein                                   33.1    3.6
  vvu:VV2_0121  hypothetical protein                                  33.1    3.6
  vej:VEJY3_18991  efflux (PET) family transporter                    32.0    8.9


> ptq:P700755_001428  putative nuclease, PIN_SF superfamily protein
Length=187

 Score = 36.2 bits (82),  Expect = 0.16, Method: Compositional matrix adjust.
 Identities = 15/41 (37%), Positives = 26/41 (63%), Gaps = 0/41 (0%)

Query  17   NVKTGAIDYLMYFDWSARAINEFITDFVDSNKDYVVRAFKQ  57
            N+K    DYL  F  +A+  ++F+TD +D N +  V+AF++
Sbjct  112  NIKHFPKDYLASFGLTAKTADDFLTDIIDLNPEQAVKAFRE  152


> zga:zobellia_3240  hypothetical protein
Length=187

 Score = 34.7 bits (78),  Expect = 0.62, Method: Compositional matrix adjust.
 Identities = 15/41 (37%), Positives = 25/41 (61%), Gaps = 0/41 (0%)

Query  17   NVKTGAIDYLMYFDWSARAINEFITDFVDSNKDYVVRAFKQ  57
            N+K     YL  F  SA+  ++F+TD +D N +  ++AFK+
Sbjct  112  NIKDFPKAYLSSFGLSAKTADDFLTDIIDLNPEEAIKAFKE  152


> vsp:VS_II0460  hypothetical protein
Length=728

 Score = 34.3 bits (77),  Expect = 1.5, Method: Composition-based stats.
 Identities = 13/38 (34%), Positives = 26/38 (68%), Gaps = 1/38 (3%)

Query  22   AIDYLMYFDWSARAINEFITDFVDSNKDYVVRAFKQYK  59
            A+ Y++  DW ++ +++ + D +DSNKDY+ +   QY+
Sbjct  525  AVSYILP-DWQSKRLHKVMADALDSNKDYLAQIIGQYR  561


> vvm:VVMO6_03617  efflux (PET) family inner membrane protein YccS
Length=717

 Score = 33.1 bits (74),  Expect = 3.6, Method: Composition-based stats.
 Identities = 11/34 (32%), Positives = 24/34 (71%), Gaps = 0/34 (0%)

Query  26   LMYFDWSARAINEFITDFVDSNKDYVVRAFKQYK  59
            L+  DW +R +++ ++D +D+NK Y+++   QY+
Sbjct  528  LILPDWQSRRLHKVMSDAIDANKQYLLQIIGQYR  561


> vvl:VV93_v1c36290  efflux (PET) family inner membrane protein 
YccS
Length=717

 Score = 33.1 bits (74),  Expect = 3.6, Method: Composition-based stats.
 Identities = 11/34 (32%), Positives = 24/34 (71%), Gaps = 0/34 (0%)

Query  26   LMYFDWSARAINEFITDFVDSNKDYVVRAFKQYK  59
            L+  DW +R +++ ++D +D+NK Y+++   QY+
Sbjct  528  LILPDWQSRRLHKVMSDAIDANKQYLLQIIGQYR  561


> vvy:VVA0628  hypothetical protein
Length=717

 Score = 33.1 bits (74),  Expect = 3.6, Method: Composition-based stats.
 Identities = 11/34 (32%), Positives = 24/34 (71%), Gaps = 0/34 (0%)

Query  26   LMYFDWSARAINEFITDFVDSNKDYVVRAFKQYK  59
            L+  DW +R +++ ++D +D+NK Y+++   QY+
Sbjct  528  LILPDWQSRRLHKVMSDAIDANKQYLLQIIGQYR  561


> vvu:VV2_0121  hypothetical protein
Length=717

 Score = 33.1 bits (74),  Expect = 3.6, Method: Composition-based stats.
 Identities = 11/34 (32%), Positives = 24/34 (71%), Gaps = 0/34 (0%)

Query  26   LMYFDWSARAINEFITDFVDSNKDYVVRAFKQYK  59
            L+  DW +R +++ ++D +D+NK Y+++   QY+
Sbjct  528  LILPDWQSRRLHKVMSDAIDANKQYLLQIIGQYR  561


> vej:VEJY3_18991  efflux (PET) family transporter
Length=717

 Score = 32.0 bits (71),  Expect = 8.9, Method: Composition-based stats.
 Identities = 12/39 (31%), Positives = 27/39 (69%), Gaps = 1/39 (3%)

Query  21   GAIDYLMYFDWSARAINEFITDFVDSNKDYVVRAFKQYK  59
            GA+ +++  DW +R +++ ++D +D+NK Y+ +   QY+
Sbjct  524  GAVMFILP-DWQSRRLHKVMSDAIDANKQYLGQIIGQYR  561



Lambda      K        H        a         alpha
   0.331    0.140    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 125220504231