bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: all_orgs
14,240,465 sequences; 5,121,972,263 total letters
Query= Contig-41_CDS_annotation_glimmer3.pl_2_1
Length=85
Score E
Sequences producing significant alignments: (Bits) Value
smw:SMWW4_v1c31620 hypothetical protein 32.3 1.8
tru:101068883 transcription factor A, mitochondrial-like 33.1 3.7
puv:PUV_20050 hypothetical protein 33.1 4.6
yli:YALI0D23067g YALI0D23067p 33.1 4.7
oaa:100076559 transcription factor A, mitochondrial-like 32.7 4.8
rrd:RradSPS_1129 Phosphomannomutase 32.7 5.6
hni:W911_05775 hypothetical protein 32.7 6.2
olu:OSTLU_30814 hypothetical protein 32.7 6.3
mjh:JH146_1072 anaerobic ribonucleoside-triphosphate reductase... 32.7 7.5
ecas:ECBG_00889 signal peptidase I 32.0 8.5
ola:101167906 transcription factor A, mitochondrial-like 32.3 8.9
vej:VEJY3_23341 methyl-accepting chemotaxis protein 32.3 9.5
> smw:SMWW4_v1c31620 hypothetical protein
Length=63
Score = 32.3 bits (72), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 10/65 (15%)
Query 9 PSDPIEALNLVHQSEYAFA-QLSADDKAKYNNDWRRWFADLLSGRDNLSE-KLSSVVPNS 66
PS P ++++L+ F +LS+ +K Y N R W + +D LS+ K+S ++PN
Sbjct 6 PSQPPQSISLI-----LFGIELSSKNKKIYKNKTRHW---PYAPQDQLSQDKISKIIPNK 57
Query 67 DVEKE 71
EK+
Sbjct 58 KAEKK 62
> tru:101068883 transcription factor A, mitochondrial-like
Length=279
Score = 33.1 bits (74), Expect = 3.7, Method: Composition-based stats.
Identities = 15/40 (38%), Positives = 25/40 (63%), Gaps = 1/40 (3%)
Query 17 NLVHQSEYAFAQLSADDKAKYNNDWRRWFADLLS-GRDNL 55
NL+ + A+ QL+ DDK +Y N+ + W +L GR++L
Sbjct 193 NLLGHQKQAYKQLAEDDKIRYKNEIKSWEEHMLEIGREDL 232
> puv:PUV_20050 hypothetical protein
Length=341
Score = 33.1 bits (74), Expect = 4.6, Method: Composition-based stats.
Identities = 27/63 (43%), Positives = 33/63 (52%), Gaps = 3/63 (5%)
Query 20 HQSEYAFAQLSADDKAKYNNDWRRWFADLLSGRDNLSEKLSSVVPNS-DVEKEGADSV-V 77
H +E A ++AD KA N DWRR A L+GRD + +SV P D G SV V
Sbjct 96 HVAEVVEAMIAAD-KANLNLDWRRATAIDLAGRDLKAAVQTSVNPKVIDCPSPGGYSVGV 154
Query 78 EKD 80
KD
Sbjct 155 AKD 157
> yli:YALI0D23067g YALI0D23067p
Length=454
Score = 33.1 bits (74), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
Query 2 YGDFTGLPSDPIE-ALNLVHQSEYAFAQLSADDKAKYNNDWRRWFADLLSGRDNLSEKLS 60
Y D LP DP++ A LVH S F DDK +Y+ +F L+G L E ++
Sbjct 246 YADMLALPDDPLKLAATLVHDSVAYFGASHKDDKPRYS----FFFLHGLTGSQALCEIVA 301
Query 61 S 61
S
Sbjct 302 S 302
> oaa:100076559 transcription factor A, mitochondrial-like
Length=264
Score = 32.7 bits (73), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 33/65 (51%), Gaps = 1/65 (2%)
Query 17 NLVHQSEYAFAQLSADDKAKYNNDWRRWFADLL-SGRDNLSEKLSSVVPNSDVEKEGADS 75
NL + A+ QL+ DDK +Y N+ R W + ++ GR++L S + GA S
Sbjct 199 NLPSSQKQAYIQLAEDDKIRYENEMRSWESQMVDVGREDLLRSKSRRRKTESENQGGAQS 258
Query 76 VVEKD 80
V K+
Sbjct 259 GVGKE 263
> rrd:RradSPS_1129 Phosphomannomutase
Length=451
Score = 32.7 bits (73), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query 3 GDFTGLPSDPIEALNLVHQSEYAFAQLSADDKAKYNNDWRRWFADLLSGRDNLSEKLSSV 62
G F P +PIE N+V E A+ AD ++ D R F GR + L+++
Sbjct 207 GSFPNHPPNPIEPENMVELQERVVAE-GADFGVAFDGDADRCFLVDEQGRTVSGDILAAL 265
Query 63 VPNSDVEKEGADSVV 77
V + +EKE +++
Sbjct 266 VAKNILEKEPGATIL 280
> hni:W911_05775 hypothetical protein
Length=365
Score = 32.7 bits (73), Expect = 6.2, Method: Composition-based stats.
Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 6/62 (10%)
Query 7 GLPSDPIEALNLVHQSEYAFAQLSADDKAKYNNDWRRWFADLLSGRDNLSEKLSSVVPNS 66
GLPSD IE+L + +A+A ++D +N D R ADL NL +++VP S
Sbjct 122 GLPSDGIESLG---RRRFAYAVRTSDAVVFHNRDHARTLADLGMLPPNLP---TAIVPGS 175
Query 67 DV 68
V
Sbjct 176 GV 177
> olu:OSTLU_30814 hypothetical protein
Length=389
Score = 32.7 bits (73), Expect = 6.3, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 20/34 (59%), Gaps = 0/34 (0%)
Query 15 ALNLVHQSEYAFAQLSADDKAKYNNDWRRWFADL 48
A +L + +FA+LS D K N+ W RWF DL
Sbjct 351 ATSLADFKKNSFAELSDDAKEVINSRWARWFTDL 384
> mjh:JH146_1072 anaerobic ribonucleoside-triphosphate reductase
NrdD
Length=1297
Score = 32.7 bits (73), Expect = 7.5, Method: Composition-based stats.
Identities = 18/52 (35%), Positives = 31/52 (60%), Gaps = 1/52 (2%)
Query 28 QLSADDKAKYNNDWRRWFADLLSGRDNLSEKLSSVVPNSDVEKEGADSVVEK 79
+LS D K+K N WR + ++G++N+ EKLS++ ++ KE V +K
Sbjct 976 KLSIDKKSKINEKWRDCYVIKITGKENI-EKLSNIKIENNGRKEVIPKVADK 1026
> ecas:ECBG_00889 signal peptidase I
Length=189
Score = 32.0 bits (71), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 23/86 (27%), Positives = 38/86 (44%), Gaps = 9/86 (10%)
Query 5 FTGLPSDPIE----ALNL---VHQSEYA--FAQLSADDKAKYNNDWRRWFADLLSGRDNL 55
GLP D IE L + V++ Y F + ADD+ + +R F + +G +
Sbjct 76 LIGLPGDTIEMKDDVLTINGEVYEEPYLDEFKEKFADDQLQDEYSYREMFQQIAAGAEQF 135
Query 56 SEKLSSVVPNSDVEKEGADSVVEKDS 81
+E S VP G + ++ +DS
Sbjct 136 TEDFSVTVPEGSYFVMGDNRLISRDS 161
> ola:101167906 transcription factor A, mitochondrial-like
Length=286
Score = 32.3 bits (72), Expect = 8.9, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Query 17 NLVHQSEYAFAQLSADDKAKYNNDWRRWFADLLS-GRDNL--SEKLSS 61
NL+ + + QL+ DDK +Y N+ + W +L GR++L + LSS
Sbjct 175 NLLSHQKQVYIQLAEDDKVRYKNEMKSWEDHMLEIGREDLLREQTLSS 222
> vej:VEJY3_23341 methyl-accepting chemotaxis protein
Length=547
Score = 32.3 bits (72), Expect = 9.5, Method: Composition-based stats.
Identities = 26/71 (37%), Positives = 39/71 (55%), Gaps = 4/71 (6%)
Query 2 YGDFTGLPSDPIEALNLVHQSEYAFAQLSADDKAKYNNDWRRWFADLLSGRDNLSEKLSS 61
Y DFT L P+ L H S+Y A+ + + +A N +R ++++ DNLSEKL+
Sbjct 122 YVDFTRLTMTPL--LTQKHASQYTTAEFNQNFEAAMVN-YRVAGEEMINAIDNLSEKLNQ 178
Query 62 VVPNSDVEKEG 72
V SDV+ G
Sbjct 179 TVI-SDVQANG 188
Lambda K H a alpha
0.309 0.129 0.372 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 125410680467