bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: all_orgs
14,240,465 sequences; 5,121,972,263 total letters
Query= Contig-40_CDS_annotation_glimmer3.pl_2_1
Length=254
Score E
Sequences producing significant alignments: (Bits) Value
fve:101314332 capsid protein VP1-like 112 5e-26
sur:STAUR_3382 Rod shape-determining protein RodA 40.0 0.31
eus:EUTSA_v10012919mg hypothetical protein 38.9 0.82
hik:HifGL_001466 thioredoxin domain-containing protein 38.1 1.3
hit:NTHI1328 thioredoxin 38.1 1.3
hin:HI1159m thioredoxin domain-containing protein 38.1 1.3
hiz:R2866_1241 ybbN; Thioredoxin protein YbbN 38.1 1.3
hie:R2846_1182 ybbN; Thioredoxin protein YbbN 38.1 1.3
hif:HIBPF11150 thioredoxin domain-containing protein 38.1 1.3
hiu:HIB_13170 thioredoxin domain-containing protein 38.1 1.4
hil:HICON_01340 thioredoxin domain-containing protein 38.1 1.4
hip:CGSHiEE_06245 thioredoxin domain-containing protein 38.1 1.4
hhy:Halhy_0700 beta-lactamase 37.4 2.8
lgi:LOTGIDRAFT_173947 hypothetical protein 37.0 3.4
eac:EAL2_c20520 cysteine protease 36.6 3.8
hpr:PARA_12790 thioredoxin domain-containing protein 36.6 3.9
> fve:101314332 capsid protein VP1-like
Length=421
Score = 112 bits (281), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 59/108 (55%), Positives = 71/108 (66%), Gaps = 2/108 (2%)
Query 2 AFQIQKLYEKDARGGSRYIEILKSHFGVTSPDARLQRPEYLGGNRVPININQVVQQSATA 61
+FQIQKL E+DARGG+RY EI++SHFGV SPDARLQRPEYLGG PINI + Q T
Sbjct 314 SFQIQKLLERDARGGTRYTEIIRSHFGVASPDARLQRPEYLGGGSTPINIAPIAQTGGTG 373
Query 62 SGETA--QGTVTGMSVTTDTHSDFTKSFTEHGFVIGVMVARYDHTYQQ 107
+ T QG + F++SF EHG VIG++ R D TYQQ
Sbjct 374 AQGTTTPQGNLAAFGTYMAKGHGFSQSFVEHGHVIGLVSVRADLTYQQ 421
> sur:STAUR_3382 Rod shape-determining protein RodA
Length=375
Score = 40.0 bits (92), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 26/77 (34%), Positives = 38/77 (49%), Gaps = 13/77 (17%)
Query 67 QGTVTGMSVTTDTHSDFTKSF--TEHGFV-IGVMVARYDHTYQQGLERFWSRKDRFD--- 120
+GT TG+S + H+DF S EHGF+ V++A Y + L ++ +DRF
Sbjct 256 EGTQTGLSFLPEQHTDFIFSVWAEEHGFLSCLVLLALYGGLFSLALAVGFNARDRFGAFV 315
Query 121 -------YYWPVFANIG 130
+W VF NIG
Sbjct 316 AVGVTAMLFWQVFENIG 332
> eus:EUTSA_v10012919mg hypothetical protein
Length=652
Score = 38.9 bits (89), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 29/101 (29%), Positives = 42/101 (42%), Gaps = 9/101 (9%)
Query 33 DARLQRPEYLGGNRVPININQVVQQSATASGETAQGTVTGMSVTTDTHSDFTKSFTEHGF 92
D R P+ L GN V +N+N + Q ++TG +T D+ DFT G
Sbjct 148 DTRKSHPDDLDGNHVGLNLNSI--------NSVVQESLTGRGITIDSGVDFTAHVRYDGT 199
Query 93 VIGVMVARYDHTYQQGLERFWSRKDRFDYYWPVFANIGEQA 133
+ V V+R Y+Q +SR Y P +G A
Sbjct 200 FLSVYVSRNLEVYEQ-RNLVFSRAIDLSAYLPETVYVGFTA 239
> hik:HifGL_001466 thioredoxin domain-containing protein
Length=285
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (52%), Gaps = 9/60 (15%)
Query 182 QYAQSLDVWHLADDYSALPMLSDSWIREDKANVDRVLAVTSSVSNQLFADIYIKNRTTRP 241
++ Q+LD + + +ALP+L D+W DK N D L L+A+ YI + T P
Sbjct 118 KFQQALDFLQVENYEAALPLLKDAWELSDKKNSDVAL---------LYAETYIAMKKTEP 168
> hit:NTHI1328 thioredoxin
Length=285
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (52%), Gaps = 9/60 (15%)
Query 182 QYAQSLDVWHLADDYSALPMLSDSWIREDKANVDRVLAVTSSVSNQLFADIYIKNRTTRP 241
++ Q+LD + + +ALP+L D+W DK N D L L+A+ YI + T P
Sbjct 118 KFQQALDFLQVENYEAALPLLKDAWELSDKKNSDVAL---------LYAETYIAMKKTEP 168
> hin:HI1159m thioredoxin domain-containing protein
Length=286
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (52%), Gaps = 9/60 (15%)
Query 182 QYAQSLDVWHLADDYSALPMLSDSWIREDKANVDRVLAVTSSVSNQLFADIYIKNRTTRP 241
++ Q+LD + + +ALP+L D+W DK N D L L+A+ YI + T P
Sbjct 119 KFQQALDFLQVENYEAALPLLKDAWELSDKKNSDVAL---------LYAETYIAMKKTEP 169
> hiz:R2866_1241 ybbN; Thioredoxin protein YbbN
Length=285
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (52%), Gaps = 9/60 (15%)
Query 182 QYAQSLDVWHLADDYSALPMLSDSWIREDKANVDRVLAVTSSVSNQLFADIYIKNRTTRP 241
++ Q+LD + + +ALP+L D+W DK N D L L+A+ YI + T P
Sbjct 118 KFQQALDFLQVENYEAALPLLKDAWELSDKKNSDVAL---------LYAETYIAMKKTEP 168
> hie:R2846_1182 ybbN; Thioredoxin protein YbbN
Length=285
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (52%), Gaps = 9/60 (15%)
Query 182 QYAQSLDVWHLADDYSALPMLSDSWIREDKANVDRVLAVTSSVSNQLFADIYIKNRTTRP 241
++ Q+LD + + +ALP+L D+W DK N D L L+A+ YI + T P
Sbjct 118 KFQQALDFLQVENYEAALPLLKDAWELSDKKNSDIAL---------LYAETYIAMKKTEP 168
> hif:HIBPF11150 thioredoxin domain-containing protein
Length=285
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (52%), Gaps = 9/60 (15%)
Query 182 QYAQSLDVWHLADDYSALPMLSDSWIREDKANVDRVLAVTSSVSNQLFADIYIKNRTTRP 241
++ Q+LD + + +ALP+L D+W DK N D L L+A+ YI + T P
Sbjct 118 KFQQALDFLQVENYEAALPLLKDAWELSDKKNSDVAL---------LYAETYIAMKKTEP 168
> hiu:HIB_13170 thioredoxin domain-containing protein
Length=285
Score = 38.1 bits (87), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (52%), Gaps = 9/60 (15%)
Query 182 QYAQSLDVWHLADDYSALPMLSDSWIREDKANVDRVLAVTSSVSNQLFADIYIKNRTTRP 241
++ Q+LD + + +ALP+L D+W DK N D L L+A+ YI + T P
Sbjct 118 KFQQALDFLQVENYEAALPLLKDAWELSDKKNSDVAL---------LYAETYIAMKKTEP 168
> hil:HICON_01340 thioredoxin domain-containing protein
Length=285
Score = 38.1 bits (87), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (52%), Gaps = 9/60 (15%)
Query 182 QYAQSLDVWHLADDYSALPMLSDSWIREDKANVDRVLAVTSSVSNQLFADIYIKNRTTRP 241
++ Q+LD + + +ALP+L D+W DK N D L L+A+ YI + T P
Sbjct 118 KFQQALDFLQVENYEAALPLLKDAWELSDKKNSDVAL---------LYAETYIAMKKTEP 168
> hip:CGSHiEE_06245 thioredoxin domain-containing protein
Length=285
Score = 38.1 bits (87), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (52%), Gaps = 9/60 (15%)
Query 182 QYAQSLDVWHLADDYSALPMLSDSWIREDKANVDRVLAVTSSVSNQLFADIYIKNRTTRP 241
++ Q+LD + + +ALP+L D+W DK N D L L+A+ YI + T P
Sbjct 118 KFQQALDFLQVENYEAALPLLKDAWELSDKKNSDVAL---------LYAETYIAMKKTEP 168
> hhy:Halhy_0700 beta-lactamase
Length=451
Score = 37.4 bits (85), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 38/137 (28%), Positives = 56/137 (41%), Gaps = 20/137 (15%)
Query 82 DFTKSF---TEHGFVIGVMVARYDHTYQQGLERFWSRKDRFDYYWPVFANIGEQAVKNKE 138
D TKS E+G+ ++V D KD YY IG QAV
Sbjct 26 DVTKSIQTRIEYGYSPSIVVGVID-------------KDGPQYYLFGTKTIGGQAVNEHT 72
Query 139 IFAQGPGVKDTAGAVIDDQVFGYQEAWAD--YRYKPSRVTGEMRSQYAQSLDVWHLADDY 196
I+ G K G ++ V Q D +Y P+ VT R + + + HL+D
Sbjct 73 IYEIGSISKTFTGILLAQMVLAGQLKTDDPAQQYLPATVTLPTRD--GKQITLGHLSDHS 130
Query 197 SALPMLSDSWIREDKAN 213
S LP + +++ +D AN
Sbjct 131 SGLPGMPNNFDPKDPAN 147
> lgi:LOTGIDRAFT_173947 hypothetical protein
Length=466
Score = 37.0 bits (84), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/54 (39%), Positives = 33/54 (61%), Gaps = 3/54 (6%)
Query 40 EYLGGNRVPININQVVQQSATASGETAQGTVTGMSV--TTDTHSDFTKSFTEHG 91
+ + G +P++IN + +A A+ + A T+ GMSV TD H++ KSFTE G
Sbjct 194 QLISGQNIPLSINGDKESTAGAT-DVAHLTINGMSVMLVTDWHNEAVKSFTEMG 246
> eac:EAL2_c20520 cysteine protease
Length=356
Score = 36.6 bits (83), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 48/109 (44%), Gaps = 17/109 (16%)
Query 93 VIGVMVARYDHTYQQGLERFWSRKDRFDYY-----WPVF----ANIGEQAVKNKEIFAQG 143
+G V Y TYQQG++ WS K DYY P F N G A E G
Sbjct 82 CVGWAVGYYLRTYQQGMDFEWSVKSGIDYYPSRVFSPTFIYNQINYGVDAGATLE--DAG 139
Query 144 PGVKDTAGAVIDDQVFGYQEAWADYRYKPSRVTGEMRSQYAQSLDVWHL 192
+++ A ++D F Y + DYR KPS + + S Y + WH+
Sbjct 140 RLLENVGAATLED--FPYIQ--GDYRTKPS--SDVISSAYPHRIRDWHI 182
> hpr:PARA_12790 thioredoxin domain-containing protein
Length=285
Score = 36.6 bits (83), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (52%), Gaps = 9/60 (15%)
Query 182 QYAQSLDVWHLADDYSALPMLSDSWIREDKANVDRVLAVTSSVSNQLFADIYIKNRTTRP 241
++ ++LD + D SALP+L ++W DK N D L L+A+ YI + T P
Sbjct 118 KFQKALDFLQVEDYDSALPLLKEAWELSDKKNSDVAL---------LYAETYIAMKKTEP 168
Lambda K H a alpha
0.318 0.133 0.401 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 375861744714