bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: all_orgs
14,240,465 sequences; 5,121,972,263 total letters
Query= Contig-3_CDS_annotation_glimmer3.pl_2_5
Length=556
Score E
Sequences producing significant alignments: (Bits) Value
raa:Q7S_18530 replication protein A 42.0 0.37
clp:CPK_ORF00729 hypothetical protein 38.5 0.80
rcu:RCOM_2034050 hypothetical protein 40.0 1.1
mdo:100026128 FER1L6; fer-1-like 6 (C. elegans) 39.7 2.3
cjc:100386250 FER1L6; fer-1-like family member 6 39.3
cpt:CpB0227 hypothetical protein 36.6 3.4
cpj:CPj0222 hypothetical protein 36.6 3.4
cpa:CP0543 hypothetical protein 36.6 3.4
cpn:CPn0222 hypothetical protein 36.6 3.4
rar:RIA_1046 Periplasmic protease 38.9 3.8
rai:RA0C_1448 hypothetical protein 38.9 3.8
ran:Riean_1179 carboxyl-terminal protease (EC:3.4.21.102) 38.9 3.8
rag:B739_0700 hypothetical protein 38.5 4.0
rat:M949_1159 putative periplasmic tail-specific proteinase 38.5 4.5
rae:G148_0427 hypothetical protein 38.5 5.0
rah:Rahaq_0573 replication protein A 38.1 5.4
aml:100480866 FER1L6; fer-1-like 6 (C. elegans) 38.5 5.6
shr:100935209 fer-1-like protein 6-like 37.7 7.2
umr:103661615 FER1L6; fer-1-like family member 6 38.1
smn:SMA_0986 repB; Replication protein RepB 36.6 8.1
sers:SERRSCBI_07805 replication protein A 37.0 8.1
sgg:SGGBAA2069_c10340 Plasmid replication protein 36.6 8.6
cfa:482036 FER1L6; fer-1-like 6 (C. elegans) 37.7 8.7
tup:102499656 FER1L6; fer-1-like 6 (C. elegans) 37.7 9.5
> raa:Q7S_18530 replication protein A
Length=722
Score = 42.0 bits (97), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 33/64 (52%), Gaps = 12/64 (19%)
Query 223 PHWHGILFFNSDALTSSICELVSK----------SWSYGRTDCS-LSRGSAAGYVASYIN 271
PHWH ++ F A+ S+ +++ K + R DC L+RG AAGY+A YI
Sbjct 393 PHWH-MMLFTKPAMRKSVIDIMRKYAMKEDGDERGAAKNRFDCKHLNRGGAAGYIAKYIA 451
Query 272 SFVD 275
+D
Sbjct 452 KNID 455
> clp:CPK_ORF00729 hypothetical protein
Length=121
Score = 38.5 bits (88), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 23/47 (49%), Positives = 28/47 (60%), Gaps = 4/47 (9%)
Query 190 NLFFKRLRKLISERYDEKICYYLVSEYGGRTYRPHWHGILFFNSDAL 236
LF KRLR IS KI Y+ EYG + RPH+H +L FN D+L
Sbjct 76 QLFLKRLRDRIS---PHKIRYFGCGEYGTKLQRPHYH-LLIFNYDSL 118
> rcu:RCOM_2034050 hypothetical protein
Length=345
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 46/113 (41%), Gaps = 32/113 (28%)
Query 185 NPYDQNLFFKRLRKLISERYDEKICYYLVSEYGGRTYRPH------WHGILFFNSDALTS 238
+P D L+ + + KLI K+ V +G R PH WHG++F N
Sbjct 236 SPRDAQLYLRNVWKLIRA----KLARLGVHYFGIRVAEPHHDATPHWHGLVFSND---VQ 288
Query 239 SICELVSKSWSYGRTD----------------CSLSRGSAAGYVASYINSFVD 275
+ C ++ + YG D +RGSA GYVA YI +D
Sbjct 289 AFCRVMRE---YGLQDSPGEKGAAERRMKFEIIDRARGSAVGYVAKYIAKNID 338
> mdo:100026128 FER1L6; fer-1-like 6 (C. elegans)
Length=1873
Score = 39.7 bits (91), Expect = 2.3, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 40/84 (48%), Gaps = 8/84 (10%)
Query 206 EKICYYLVSEYGGRTYRPHWHGILFFNSDALTSSICELVSKSWSYGRTDCSLSRGSAAGY 265
+K C Y +S +G +T+R HW +L +D L ++ E+ + +S + G
Sbjct 597 KKPCVYFISSWGDQTFRLHWSNMLDKMADNLEENLEEV--------KELIKISEEESEGK 648
Query 266 VASYINSFVDLPDFFNRHKEIKPK 289
+ + +N+F+ F E KPK
Sbjct 649 IKTALNNFISQSSAFISQAEKKPK 672
> cjc:100386250 FER1L6; fer-1-like family member 6
Length=1883
Score = 39.3 bits (90), Expect = 2.8, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 39/85 (46%), Gaps = 8/85 (9%)
Query 205 DEKICYYLVSEYGGRTYRPHWHGILFFNSDALTSSICELVSKSWSYGRTDCSLSRGSAAG 264
D+K C Y +S +G +T+R HW +L +D L SI E+ R +S +
Sbjct 602 DKKPCVYFISSWGDQTFRLHWSNMLEKMADFLEESIEEM--------RELIKISEEAPEE 653
Query 265 YVASYINSFVDLPDFFNRHKEIKPK 289
+ + ++ F+ F E KPK
Sbjct 654 KMKTVLSDFISQSSAFISEAEKKPK 678
> cpt:CpB0227 hypothetical protein
Length=113
Score = 36.6 bits (83), Expect = 3.4, Method: Composition-based stats.
Identities = 19/39 (49%), Positives = 24/39 (62%), Gaps = 3/39 (8%)
Query 191 LFFKRLRKLISERYDEKICYYLVSEYGGRTYRPHWHGIL 229
LF KRLRK+IS KI Y+ YG + RPH+H +L
Sbjct 77 LFLKRLRKMISP---HKIRYFECGAYGTKLQRPHYHLLL 112
> cpj:CPj0222 hypothetical protein
Length=113
Score = 36.6 bits (83), Expect = 3.4, Method: Composition-based stats.
Identities = 19/39 (49%), Positives = 24/39 (62%), Gaps = 3/39 (8%)
Query 191 LFFKRLRKLISERYDEKICYYLVSEYGGRTYRPHWHGIL 229
LF KRLRK+IS KI Y+ YG + RPH+H +L
Sbjct 77 LFLKRLRKMISP---HKIRYFECGAYGTKLQRPHYHLLL 112
> cpa:CP0543 hypothetical protein
Length=113
Score = 36.6 bits (83), Expect = 3.4, Method: Composition-based stats.
Identities = 19/39 (49%), Positives = 24/39 (62%), Gaps = 3/39 (8%)
Query 191 LFFKRLRKLISERYDEKICYYLVSEYGGRTYRPHWHGIL 229
LF KRLRK+IS KI Y+ YG + RPH+H +L
Sbjct 77 LFLKRLRKMISP---HKIRYFECGAYGTKLQRPHYHLLL 112
> cpn:CPn0222 hypothetical protein
Length=113
Score = 36.6 bits (83), Expect = 3.4, Method: Composition-based stats.
Identities = 19/39 (49%), Positives = 24/39 (62%), Gaps = 3/39 (8%)
Query 191 LFFKRLRKLISERYDEKICYYLVSEYGGRTYRPHWHGIL 229
LF KRLRK+IS KI Y+ YG + RPH+H +L
Sbjct 77 LFLKRLRKMISP---HKIRYFECGAYGTKLQRPHYHLLL 112
> rar:RIA_1046 Periplasmic protease
Length=706
Score = 38.9 bits (89), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 4/70 (6%)
Query 213 VSEYGGRTYRPHWHGILFFNSDALTSSICELVSKSW-SYGRTDCSLSRGSAAGYVASYIN 271
+ Y +T P W G L + L++S E+++ + +YGR ++ GS + Y +
Sbjct 457 IEVYKNKTNAPVWDGPLLIMQNELSASASEILAGAMKAYGR---AVIFGSPSSYGKGTVQ 513
Query 272 SFVDLPDFFN 281
+FVDL F N
Sbjct 514 TFVDLNRFLN 523
> rai:RA0C_1448 hypothetical protein
Length=706
Score = 38.9 bits (89), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 4/70 (6%)
Query 213 VSEYGGRTYRPHWHGILFFNSDALTSSICELVSKSW-SYGRTDCSLSRGSAAGYVASYIN 271
+ Y +T P W G L + L++S E+++ + +YGR ++ GS + Y +
Sbjct 457 IEVYKNKTNAPVWDGPLLIMQNELSASASEILAGAMKAYGR---AVIFGSPSSYGKGTVQ 513
Query 272 SFVDLPDFFN 281
+FVDL F N
Sbjct 514 TFVDLNRFLN 523
> ran:Riean_1179 carboxyl-terminal protease (EC:3.4.21.102)
Length=706
Score = 38.9 bits (89), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 4/70 (6%)
Query 213 VSEYGGRTYRPHWHGILFFNSDALTSSICELVSKSW-SYGRTDCSLSRGSAAGYVASYIN 271
+ Y +T P W G L + L++S E+++ + +YGR ++ GS + Y +
Sbjct 457 IEVYKNKTNAPVWDGPLLIMQNELSASASEILAGAMKAYGR---AVIFGSPSSYGKGTVQ 513
Query 272 SFVDLPDFFN 281
+FVDL F N
Sbjct 514 TFVDLNRFLN 523
> rag:B739_0700 hypothetical protein
Length=706
Score = 38.5 bits (88), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 4/67 (6%)
Query 216 YGGRTYRPHWHGILFFNSDALTSSICELVSKSW-SYGRTDCSLSRGSAAGYVASYINSFV 274
Y +T P W G L + L++S E+++ + +YGR ++ GS + Y + +FV
Sbjct 460 YKNKTNAPVWDGPLLIMQNELSASASEILAGAMKAYGR---AVIFGSPSSYGKGTVQTFV 516
Query 275 DLPDFFN 281
DL F N
Sbjct 517 DLNRFLN 523
> rat:M949_1159 putative periplasmic tail-specific proteinase
Length=670
Score = 38.5 bits (88), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 4/67 (6%)
Query 216 YGGRTYRPHWHGILFFNSDALTSSICELVSKSW-SYGRTDCSLSRGSAAGYVASYINSFV 274
Y +T P W G L + L++S E+++ + +YGR ++ GS + Y + +FV
Sbjct 424 YKNKTNAPVWDGPLLIMQNELSASASEILAGAMKAYGR---AVIFGSPSSYGKGTVQTFV 480
Query 275 DLPDFFN 281
DL F N
Sbjct 481 DLNRFLN 487
> rae:G148_0427 hypothetical protein
Length=663
Score = 38.5 bits (88), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 4/67 (6%)
Query 216 YGGRTYRPHWHGILFFNSDALTSSICELVSKSW-SYGRTDCSLSRGSAAGYVASYINSFV 274
Y +T P W G L + L++S E+++ + +YGR ++ GS + Y + +FV
Sbjct 417 YKNKTNAPVWDGPLLIMQNELSASASEILAGAMKAYGR---AVIFGSPSSYGKGTVQTFV 473
Query 275 DLPDFFN 281
DL F N
Sbjct 474 DLNRFLN 480
> rah:Rahaq_0573 replication protein A
Length=747
Score = 38.1 bits (87), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 12/64 (19%)
Query 223 PHWHGILFFNSDALTSSICELVSK----------SWSYGRTDCS-LSRGSAAGYVASYIN 271
PHWH ++ F A+ + +++ K R DC ++RG AAGY+A YI
Sbjct 391 PHWH-MMLFTKPAMRQRVIDIMRKYAMKEDGDERGAVKNRFDCKHMNRGGAAGYIAKYIA 449
Query 272 SFVD 275
+D
Sbjct 450 KNID 453
> aml:100480866 FER1L6; fer-1-like 6 (C. elegans)
Length=1860
Score = 38.5 bits (88), Expect = 5.6, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 8/84 (10%)
Query 206 EKICYYLVSEYGGRTYRPHWHGILFFNSDALTSSICELVSKSWSYGRTDCSLSRGSAAGY 265
+K C Y +S +G +T+R HW +L +D L SI E+ R +S ++
Sbjct 579 KKPCVYFISSWGDQTFRLHWSNMLENMADLLEESIEEV--------RELIKISEKASEDK 630
Query 266 VASYINSFVDLPDFFNRHKEIKPK 289
+ + ++ F+ F E KPK
Sbjct 631 MKTVLSDFISQSSAFISEAEKKPK 654
> shr:100935209 fer-1-like protein 6-like
Length=757
Score = 37.7 bits (86), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 43/96 (45%), Gaps = 8/96 (8%)
Query 206 EKICYYLVSEYGGRTYRPHWHGILFFNSDALTSSICELVSKSWSYGRTDCSLSRGSAAGY 265
+K C Y +S +G +T+R HW +L +D+L +I E+ + +S +
Sbjct 426 KKPCVYFMSSWGDQTFRLHWSNMLDKMADSLEENIEEV--------KELIKVSEEESERK 477
Query 266 VASYINSFVDLPDFFNRHKEIKPKSYHSKGLSVNSL 301
+ + +N+F+ F E KPK + L L
Sbjct 478 IKTALNNFISQSSAFISQAEKKPKMLNQTTLDKKRL 513
> umr:103661615 FER1L6; fer-1-like family member 6
Length=1865
Score = 38.1 bits (87), Expect = 7.4, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 8/84 (10%)
Query 206 EKICYYLVSEYGGRTYRPHWHGILFFNSDALTSSICELVSKSWSYGRTDCSLSRGSAAGY 265
+K C Y +S +G +T+R HW +L +D L SI E+ R +S ++
Sbjct 580 KKPCVYFISSWGEQTFRLHWSNMLEKMADLLEESIEEV--------RELIKISEKASEDK 631
Query 266 VASYINSFVDLPDFFNRHKEIKPK 289
+ + ++ F+ F E KPK
Sbjct 632 MKTVLSDFISQSSAFISEAEKKPK 655
> smn:SMA_0986 repB; Replication protein RepB
Length=203
Score = 36.6 bits (83), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (69%), Gaps = 0/29 (0%)
Query 218 GRTYRPHWHGILFFNSDALTSSICELVSK 246
G +PHWHG+L+F+S S + ELVS+
Sbjct 50 GEFKKPHWHGVLYFDSLKSYSQVSELVSE 78
> sers:SERRSCBI_07805 replication protein A
Length=283
Score = 37.0 bits (84), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (51%), Gaps = 9/61 (15%)
Query 223 PHWHGILFFNSDALTSSICELVSK-------SWSYGRTDCS-LSRGSAAGYVASYINSFV 274
PHWH ++ F S + +++ + + R DC L++G AAGY+A YI +
Sbjct 94 PHWH-MMLFTSKKQRQQVIDIMRRYATAEDGDAAKNRFDCKHLNKGGAAGYIAKYIAKNI 152
Query 275 D 275
D
Sbjct 153 D 153
> sgg:SGGBAA2069_c10340 Plasmid replication protein
Length=204
Score = 36.6 bits (83), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (69%), Gaps = 0/29 (0%)
Query 218 GRTYRPHWHGILFFNSDALTSSICELVSK 246
G +PHWHG+L+F+S S + ELVS+
Sbjct 50 GEFKKPHWHGVLYFDSLKSYSQVSELVSE 78
> cfa:482036 FER1L6; fer-1-like 6 (C. elegans)
Length=1858
Score = 37.7 bits (86), Expect = 8.7, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 8/84 (10%)
Query 206 EKICYYLVSEYGGRTYRPHWHGILFFNSDALTSSICELVSKSWSYGRTDCSLSRGSAAGY 265
+K C Y +S +G +T+R HW +L +D L SI E R +S ++
Sbjct 578 KKPCVYFISSWGDQTFRLHWSNMLEKMADLLEESIEE--------ARELIKISETASEEK 629
Query 266 VASYINSFVDLPDFFNRHKEIKPK 289
+ + ++ F+ F E KPK
Sbjct 630 MKTVLSDFISQSSAFISEAEKKPK 653
> tup:102499656 FER1L6; fer-1-like 6 (C. elegans)
Length=1858
Score = 37.7 bits (86), Expect = 9.5, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 8/84 (10%)
Query 206 EKICYYLVSEYGGRTYRPHWHGILFFNSDALTSSICELVSKSWSYGRTDCSLSRGSAAGY 265
+K C Y +S +G +T+R HW +L +D L SI E+ R +S +
Sbjct 578 KKPCVYFISSWGDQTFRLHWSNVLEKMADLLEESIEEV--------RELIKISEDAPEEK 629
Query 266 VASYINSFVDLPDFFNRHKEIKPK 289
+ + ++ F+ F E KPK
Sbjct 630 MKTVLSDFISQSSAFIAEAEKKPK 653
Lambda K H a alpha
0.323 0.137 0.426 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 1256470088418