bitscore colors: <40, 40-50 , 50-80, 80-200, >200

           BLASTP 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: all_orgs
           14,240,465 sequences; 5,121,972,263 total letters





Query= Contig-3_CDS_annotation_glimmer3.pl_2_3

Length=68
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  fli:Fleli_3723  hypothetical protein                                32.3    4.7
  smm:Smp_043150  SmIrV1 protein                                      32.7    5.7
  btm:MC28_G329  hypothetical protein                                 31.2    9.2


> fli:Fleli_3723  hypothetical protein
Length=194

 Score = 32.3 bits (72),  Expect = 4.7, Method: Compositional matrix adjust.
 Identities = 21/46 (46%), Positives = 31/46 (67%), Gaps = 2/46 (4%)

Query  18  FIIGVITTLF-VQSCTISMSVSKNNQNSTQKTEQTST-SSIDSTKI  61
           F++ V TT+  VQ+    M+  +NNQNSTQ T+ TST +SID+  +
Sbjct  11  FVLFVYTTVTSVQARVCQMNFDENNQNSTQLTQNTSTIASIDTVAL  56


> smm:Smp_043150  SmIrV1 protein
Length=582

 Score = 32.7 bits (73),  Expect = 5.7, Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 29/50 (58%), Gaps = 0/50 (0%)

Query  18   FIIGVITTLFVQSCTISMSVSKNNQNSTQKTEQTSTSSIDSTKININPKN  67
            F++G++ TL +  C I M  S + Q+     ++T TS+ D + +++  +N
Sbjct  467  FVVGLVCTLPIILCCIYMCRSPSKQHDIGMRKKTDTSTPDDSHLHVGERN  516


> btm:MC28_G329  hypothetical protein
Length=174

 Score = 31.2 bits (69),  Expect = 9.2, Method: Compositional matrix adjust.
 Identities = 20/56 (36%), Positives = 34/56 (61%), Gaps = 6/56 (11%)

Query  11  IVKLISTFIIGVITTLFVQSCTISMSVSKNNQNSTQKTEQTSTSSIDSTKININPK  66
           I+ +IS FI+GV++TL  Q+ T       NN+ ++ K+E  S+ S ++T+   N K
Sbjct  8   IITIISVFILGVVSTLVYQAST------GNNKANSIKSENVSSVSKEATENEKNKK  57



Lambda      K        H        a         alpha
   0.314    0.124    0.334    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127465902564