bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: all_orgs
14,240,465 sequences; 5,121,972,263 total letters
Query= Contig-38_CDS_annotation_glimmer3.pl_2_4
Length=647
Score E
Sequences producing significant alignments: (Bits) Value
tped:TPE_1020 carbohydrate kinase 42.0 0.39
yey:Y11_13071 hypothetical protein 40.4 0.94
pfe:PSF113_4206 transcriptional regulator, GntR family domain ... 40.0 1.5
csc:Csac_2302 radical SAM domain-containing protein 39.3 2.8
bra:BRADO6123 glcE; glycolate oxidase subunit GlcE (EC:1.1.3.15) 38.9 3.2
pba:PSEBR_a4105 GntR family transcriptional regulator 38.9 3.4
hmu:Hmuk_0693 hypothetical protein 37.7 3.9
din:Selin_1634 DNA polymerase I (EC:2.7.7.7) 38.5 5.3
cob:COB47_0828 radical SAM protein 38.5 5.6
pcb:PC402244.00.0 Pc-fam-2 protein 37.0 7.5
> tped:TPE_1020 carbohydrate kinase
Length=519
Score = 42.0 bits (97), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 30/109 (28%), Positives = 54/109 (50%), Gaps = 8/109 (7%)
Query 478 GVLMAIYHVVPLLDYVITGQPHELLYTNTSDLPFPEFDSIGMQSLHFGRFFNYKSDKFTF 537
G++ A++H L D ++T Q + N PE + + L +F YK
Sbjct 115 GLMRAVFHAAGLYDAIVTVQSSAKI--NWIREQEPEIWNKTWKVLFLSGWFIYKLTGEVC 172
Query 538 DPTASVMGYVPRFIDLKTDYDEVYGAFRSTLKSWVAPLDPEYLSKWIDS 586
D AS++GYVP F++ K D+ E + +++ + PL+ E +K ++S
Sbjct 173 DAAASMIGYVP-FVNKKRDWAE-----KPSIEQLLIPLEKEKRNKIVES 215
> yey:Y11_13071 hypothetical protein
Length=332
Score = 40.4 bits (93), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 40/156 (26%), Positives = 65/156 (42%), Gaps = 19/156 (12%)
Query 494 ITGQPHELLYTNTSDLPFPEFDSIGMQSLHFGRFFNYKSDKFTFDPTASVMGYVPRFIDL 553
I Q LL+ N S +P+ F +H+ +F N K DK T + FIDL
Sbjct 15 INNQGGALLHHN-SPIPWSTFAQYLTVWVHYEKFINEKKDKSTLNTLVESFFRSVDFIDL 73
Query 554 KTDYDEVYGAFRSTLKSWVAPL-----DPEYLSKWID-------STVSAGQTYYSLNY-- 599
T+ + Y + + L + PE++ K++D + + +T+ S Y
Sbjct 74 ATETQKDYRKYATKLLPVFGAMHPDNIKPEHVRKYMDKRGLSSRTQANREKTFMSRAYRW 133
Query 600 ----GFFKVNPSVLDSIFKVKADSSMDTDQFLSSLY 631
GF K NP FK ++ TD+ ++LY
Sbjct 134 GYERGFVKGNPCKGVKQFKEESRERYITDEEYNALY 169
> pfe:PSF113_4206 transcriptional regulator, GntR family domain
/ Aspartate aminotransferase
Length=462
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 30/108 (28%), Positives = 51/108 (47%), Gaps = 22/108 (20%)
Query 536 TFDPTASVMG--YVPRFIDLKTDY------DEVYGAFRSTLKSWVAPLDPEYL-----SK 582
+PT S + R + L ++ D+ YG F+S+ ++ +A LDPE + SK
Sbjct 249 CHNPTGSSLAPAVAQRLLQLTKEHGVLVIEDDAYGDFQSSARTRLAALDPEVVYVGSFSK 308
Query 583 WIDSTVSAGQTYYSLNYGFFKVNPSVLDSIFKVKADSSMDTDQFLSSL 630
+ S SL GF PS++ + +VK+ +SM +F S+
Sbjct 309 TLSS---------SLRVGFVVAGPSIIARLSEVKSITSMGGSRFCESV 347
> csc:Csac_2302 radical SAM domain-containing protein
Length=536
Score = 39.3 bits (90), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/65 (31%), Positives = 35/65 (54%), Gaps = 2/65 (3%)
Query 580 LSKWIDSTVSAGQTYYSLNYGFFKVNPSVLDSIFKVKADSSMDTDQFLSSLYLDVKAVRN 639
+ ID + Y++L Y F K++PS K +S+++T +F+ LY+ +K N
Sbjct 378 IEDLIDKVYNRQYLYFTLRYIFQKISPSEFFEKLSSKVNSNLNTREFIKELYIAIKE--N 435
Query 640 FDYDG 644
FD+D
Sbjct 436 FDFDK 440
> bra:BRADO6123 glcE; glycolate oxidase subunit GlcE (EC:1.1.3.15)
Length=412
Score = 38.9 bits (89), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 29/101 (29%), Positives = 44/101 (44%), Gaps = 22/101 (22%)
Query 441 DISEVVNNNLAGENQADIMGKGVGTGQGGTSFSSDEYGVLMAIYHVVPL--LDYVITGQP 498
D+ EVV + +A E D++G G S G + A V+ L L V+ +P
Sbjct 11 DVEEVVRSAIANEQPLDVIGHG----------SKRGIGQVTATNAVLDLSALSAVVAYEP 60
Query 499 HELLYTNTSDLPFPEFDSIGMQSLHFGRFFNYKSDKFTFDP 539
+EL+ T S P + S+ + KS +F FDP
Sbjct 61 NELIITAQSGAPLADLLSL----------IDSKSQQFAFDP 91
> pba:PSEBR_a4105 GntR family transcriptional regulator
Length=462
Score = 38.9 bits (89), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 14/78 (18%)
Query 558 DEVYGAFRSTLKSWVAPLDPEYL-----SKWIDSTVSAGQTYYSLNYGFFKVNPSVLDSI 612
D+ YG F+S+ ++ +A LDPE + SK + S SL GF PS++ +
Sbjct 279 DDAYGDFQSSARTRLAALDPEVVYVGSFSKTLSS---------SLRVGFVVAGPSIIARL 329
Query 613 FKVKADSSMDTDQFLSSL 630
+VK +SM +F S+
Sbjct 330 SEVKGITSMGGSRFCESV 347
> hmu:Hmuk_0693 hypothetical protein
Length=180
Score = 37.7 bits (86), Expect = 3.9, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 53/117 (45%), Gaps = 19/117 (16%)
Query 484 YHVVPLLDYVITGQPHELL-YTNTSD----LPFPEFDSIGMQSLHFGRFFNYKSDKFTFD 538
Y V D+ I G +EL Y +D +PF + + G Q+ GR+ + D+ D
Sbjct 78 YRRVVTFDFEIDGAAYELAGYRQDADDAIFVPFRD-KTTGQQTYSGGRYMELEPDETLAD 136
Query 539 PTASVMGYVPRFIDLKTDYDEVYGAFRSTLKSWVAPLDPEYLSKWIDSTVSAGQTYY 595
V+ D++ Y F + +++ PL PE + W+D+T+ AG+ Y
Sbjct 137 GDEVVL-----------DFNLAYSPFCAYSETFSCPLPPE--ANWLDTTIEAGEREY 180
> din:Selin_1634 DNA polymerase I (EC:2.7.7.7)
Length=881
Score = 38.5 bits (88), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 49/112 (44%), Gaps = 7/112 (6%)
Query 18 SGFDLSRRICFTSKAGELLPVYYKLVYPGDKFQIRHQL-FTRTQPVNTAAYTRIREYLDW 76
S F LSR + T K G+ L Y L YPG K I HQ+ F R Y R R
Sbjct 724 SAFKLSRDLGMTPKEGQALIDSYFLRYPGVKAYIDHQIAFAREHGYAQTLYGRRR----- 778
Query 77 YFVPLRLINKNLPQAL-MNMQDNPVQASGIVSNKIVTSDIPWTLLGHDSKPL 127
Y + N+N+ +A N + P+Q + KI + I L + ++ L
Sbjct 779 YLPDINSRNRNIREAAERNAVNMPIQGTSADIIKIAMNRIHQQLAPYQARML 830
> cob:COB47_0828 radical SAM protein
Length=535
Score = 38.5 bits (88), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 21/56 (38%), Positives = 29/56 (52%), Gaps = 0/56 (0%)
Query 580 LSKWIDSTVSAGQTYYSLNYGFFKVNPSVLDSIFKVKADSSMDTDQFLSSLYLDVK 635
+ ID + YY+L Y F KV+PS K DSS++T +F+ LY VK
Sbjct 378 IEDLIDKVYNRQYLYYTLRYIFQKVSPSEFFEKLSSKVDSSLNTREFVKELYRAVK 433
> pcb:PC402244.00.0 Pc-fam-2 protein
Length=194
Score = 37.0 bits (84), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 6/56 (11%)
Query 297 TTDSATRSYPVSLFSSASG--PNGINKLGAAIPDAPFNEATDTPSTYNFSIDFGTE 350
T DS+ + P + SS G PN +G +IP P N T+TPST N S ++GT+
Sbjct 2 TQDSSQNTIPNGIPSSVPGHDPN----IGTSIPPTPINFNTNTPSTDNGSTNYGTD 53
Lambda K H a alpha
0.319 0.136 0.407 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 1524475050873