bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: all_orgs 14,240,465 sequences; 5,121,972,263 total letters Query= Contig-34_CDS_annotation_glimmer3.pl_2_1 Length=111 Score E Sequences producing significant alignments: (Bits) Value azl:AZL_a06360 D-threo-aldose 1-dehydrogenase (EC:1.1.1.122) 34.3 2.9 cml:BN424_702 IolE2; xylose isomerase-like TIM barrel family p... 33.9 4.3 > azl:AZL_a06360 D-threo-aldose 1-dehydrogenase (EC:1.1.1.122) Length=353 Score = 34.3 bits (77), Expect = 2.9, Method: Composition-based stats. Identities = 16/42 (38%), Positives = 23/42 (55%), Gaps = 0/42 (0%) Query 48 REDGVLPAYNIRTDRWEVAQAAMDAVNQANLAKSKNYGKIEQ 89 R DG +PA + + WEVA AMD V+ + + Y +EQ Sbjct 189 RRDGAVPAIGLGVNEWEVALEAMDEVDLDCVMLAGRYTLLEQ 230 > cml:BN424_702 IolE2; xylose isomerase-like TIM barrel family protein Length=246 Score = 33.9 bits (76), Expect = 4.3, Method: Compositional matrix adjust. Identities = 22/65 (34%), Positives = 35/65 (54%), Gaps = 3/65 (5%) Query 39 DGAPIIYTSREDGVLPAYNIRTDRWEVAQAAMDAVN-QANLAKSKNYGKIEQQEQNALES 97 +G PI+ ++ +P N+ D + V A +DAV AN A ++ Q++N +ES Sbjct 135 NGQPILTWLLQE--VPTLNVELDTYWVQFAGVDAVEYMANYAGRMKLVHLKDQKENPIES 192 Query 98 KEIGN 102 EIGN Sbjct 193 TEIGN 197 Lambda K H a alpha 0.308 0.127 0.353 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 127903216896