bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: all_orgs
14,240,465 sequences; 5,121,972,263 total letters
Query= Contig-31_CDS_annotation_glimmer3.pl_2_3
Length=149
Score E
Sequences producing significant alignments: (Bits) Value
fch:102047083 VAC14; Vac14 homolog (S. cerevisiae) 37.4 0.86
fpg:101918203 VAC14; Vac14 homolog (S. cerevisiae) 37.0 0.98
shl:Shal_0699 alkaline phosphatase 37.0 1.1
rno:307842 Vac14; Vac14 homolog (S. cerevisiae) 36.6 1.4
acc:BDGL_002433 recF; DNA replication, recombinaison and repai... 36.2 1.6
acd:AOLE_00015 recombination protein F 35.8 2.1
ocu:100338733 VAC14; Vac14 homolog (S. cerevisiae) 36.2 2.1
spl:Spea_0598 alkaline phosphatase (EC:3.1.3.1) 35.8 2.2
apla:101798776 hydrocephalus-inducing protein homolog 36.2 2.3
ngi:103735631 Vac14; Vac14 homolog (S. cerevisiae) 35.8 2.5
mmu:234729 Vac14, AA959718, BC032215, D8Wsu151e, Tax1bp2, Trx,... 35.8 2.5
ldo:LDBPK_100400 folate/biopterin transporter, putative 35.8 2.6
oas:101114132 VAC14; Vac14 homolog (S. cerevisiae) 35.8 2.7
crb:CARUB_v10001489mg hypothetical protein 35.4 2.7
ath:AT4G08980 FBW2; F-box with WD-40 2 35.0
abz:ABZJ_00003 recombination protein F 35.0 3.8
chx:102172568 VAC14; Vac14 homolog (S. cerevisiae) 35.0 4.6
abad:ABD1_00030 recF; DNA recombination and repair protein 35.0 4.7
abaz:P795_0015 recombination protein F 35.0 4.7
abaa:IX88_02190 DNA recombination protein RecF 35.0 4.8
cge:100753800 Vac14; Vac14 homolog (S. cerevisiae) 35.0 4.8
abab:BJAB0715_00014 Recombinational DNA repair ATPase (RecF pa... 35.0 4.9
umr:103673698 protein VAC14 homolog 35.0 4.9
ldo:LDBPK_100410 folate/biopterin transporter, putative 35.0 4.9
abw:BL01_15030 DNA recombination protein RecF 35.0 5.0
abaj:BJAB0868_00014 Recombinational DNA repair ATPase (RecF pa... 35.0 5.0
abj:BJAB07104_00014 Recombinational DNA repair ATPase (RecF pa... 35.0 5.0
abd:ABTW07_0010 recF; recombination protein F 35.0 5.0
abr:ABTJ_00003 recF protein 35.0 5.0
abx:ABK1_0012 recF, DNA replication, recombinaison and repair ... 35.0 5.0
abb:ABBFA_000003 recF; recombination protein F 35.0 5.0
abn:AB57_0018 recF; recombination protein F 35.0 5.0
abc:ACICU_00003 recF; recombination protein F 35.0 5.0
aby:ABAYE0003 recF; recombination protein F 35.0 5.0
acb:A1S_0003 recF; recombination protein F 34.7 5.3
eus:EUTSA_v10019874mg hypothetical protein 35.0 5.4
abau:IX87_14435 DNA recombination protein RecF 34.7 5.5
abk:LX00_00065 DNA recombination protein RecF 34.7 5.5
ldo:LDBPK_100390 folate/biopterin transporter, putative 34.7 6.1
abh:M3Q_236 recombination protein F 34.7 6.5
bpk:BBK_4643 benB; benzoate 1,2-dioxygenase, small subunit (EC... 33.9 6.8
bpq:BPC006_II2545 benzoate 1,2 dioxygenase, beta subunit 33.9 6.8
bpz:BP1026B_II2042 benB; benzoate 1,2-dioxygenase subunit beta 33.9 6.8
bpsd:BBX_4475 benB; benzoate 1,2-dioxygenase, small subunit (E... 33.9 6.8
bpse:BDL_5310 benB; benzoate 1,2-dioxygenase, small subunit (E... 33.9 6.8
bpl:BURPS1106A_A2582 benB; benzoate 1,2 dioxygenase subunit be... 33.9 6.8
bps:BPSS1904 benB; benzoate 1,2-dioxygenase subunit beta (EC:1... 33.9 6.8
bmal:DM55_3532 benB; benzoate 1,2-dioxygenase, small subunit (... 33.9 6.8
bmn:BMA10247_A0214 benB; benzoate 1,2-dioxygenase beta subunit... 33.9 6.8
bml:BMA10229_1555 benB; benzoate 1,2-dioxygenase subunit beta 33.9 6.8
> fch:102047083 VAC14; Vac14 homolog (S. cerevisiae)
Length=986
Score = 37.4 bits (85), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 52/116 (45%), Gaps = 24/116 (21%)
Query 10 TLIAMLRTISIVLYLFPLFIKPKNRFARALDSLISLDMRRLEKESKKLRTKGLLYLMECL 69
T I M+ I+++ +L+ L+IK + R DSL + +R L ES ++ K L L E
Sbjct 617 TSIGMMTRIAVLKWLYHLYIKTPRKMFRHTDSLFPILLRTLSDESDEVILKDLEVLAEIA 676
Query 70 I--------FRIKNLSDIFP----------AGRIS------IDYSPDLPTMMVLFY 101
++SD+ P AG++S ++ SP PTM FY
Sbjct 677 SSPAGQTEGHGPSDVSDVRPSPVELHVPARAGQLSSSGTKGLECSPSTPTMNSYFY 732
> fpg:101918203 VAC14; Vac14 homolog (S. cerevisiae)
Length=871
Score = 37.0 bits (84), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 52/116 (45%), Gaps = 24/116 (21%)
Query 10 TLIAMLRTISIVLYLFPLFIKPKNRFARALDSLISLDMRRLEKESKKLRTKGLLYLMECL 69
T I M+ I+++ +L+ L+IK + R DSL + +R L ES ++ K L L E
Sbjct 502 TSIGMMTRIAVLKWLYHLYIKTPRKMFRHTDSLFPILLRTLSDESDEVILKDLEVLAEIA 561
Query 70 I--------FRIKNLSDIFP----------AGRIS------IDYSPDLPTMMVLFY 101
++SD+ P AG++S ++ SP PTM FY
Sbjct 562 SSPAGQTEGHGPSDVSDVRPSPVELHVPARAGQLSSSGTKGLECSPSTPTMNSYFY 617
> shl:Shal_0699 alkaline phosphatase
Length=436
Score = 37.0 bits (84), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 44/92 (48%), Gaps = 9/92 (10%)
Query 59 TKGLLYLMECLIFRIKNLSDIFPAGRISIDYSPDLP-TMMVLFYDGLNKYIQSCSRYYDS 117
TK L + + L+ L +F A + I +P P M+++ DG+ S RYY
Sbjct 4 TKTLTWTISALV-----LLPLFAAANVDIHDAPSRPKNMIIMIGDGMGPAYTSAYRYYQD 58
Query 118 LPETSPLKSQLRVMYPNLFVGGANTTSVKDAG 149
P+T ++ + ++ L VG A+T + +G
Sbjct 59 NPDTEEIE---QTVFDRLLVGMASTYPARKSG 87
> rno:307842 Vac14; Vac14 homolog (S. cerevisiae)
Length=783
Score = 36.6 bits (83), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 9/89 (10%)
Query 10 TLIAMLRTISIVLYLFPLFIKPKNRFARALDSLISLDMRRLEKESKKLRTKGLLYLMECL 69
T I M+ I+++ +L+ L+IK + R DSL + ++ L ES ++ K L L E
Sbjct 412 TTIGMMTRIAVLKWLYHLYIKTPRKMFRHTDSLFPILLQTLSDESDEVVLKDLEVLAEIA 471
Query 70 IFRIKNLSDIFPAGRISIDYSPDLPTMMV 98
PAG+ +PD P + V
Sbjct 472 ---------SSPAGQTDDPGAPDGPDLQV 491
> acc:BDGL_002433 recF; DNA replication, recombinaison and repair
protein
Length=360
Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/77 (29%), Positives = 37/77 (48%), Gaps = 3/77 (4%)
Query 57 LRTKGLLYLMECLIFRIKNLSDIFPAGRISIDYSPDLPTMMVLFYDGLNKYIQSCSRYYD 116
L ++ L + + +F +LS + P I ++YSP T L D LN++ + R Y
Sbjct 186 LHSQRLSIVEQWNVFFQNDLSQLLPDLEIELEYSPGFHTEQGLMQDLLNQHQKDIERRY- 244
Query 117 SLPETSPLKSQLRVMYP 133
E P ++ LR+ P
Sbjct 245 --TEYGPHRADLRLKTP 259
> acd:AOLE_00015 recombination protein F
Length=360
Score = 35.8 bits (81), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/77 (29%), Positives = 37/77 (48%), Gaps = 3/77 (4%)
Query 57 LRTKGLLYLMECLIFRIKNLSDIFPAGRISIDYSPDLPTMMVLFYDGLNKYIQSCSRYYD 116
L ++ L + + +F +LS + P I ++YSP T L D LN++ + R Y
Sbjct 186 LHSQRLGIVEQWNVFFQNDLSQLLPDLEIELEYSPGFHTEQGLMQDLLNQHQKDIERRY- 244
Query 117 SLPETSPLKSQLRVMYP 133
E P ++ LR+ P
Sbjct 245 --TEYGPHRADLRLKTP 259
> ocu:100338733 VAC14; Vac14 homolog (S. cerevisiae)
Length=778
Score = 36.2 bits (82), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 9/89 (10%)
Query 10 TLIAMLRTISIVLYLFPLFIKPKNRFARALDSLISLDMRRLEKESKKLRTKGLLYLMECL 69
T I M+ I+++ +L+ L+IK + R DSL + ++ L ES ++ K L L E
Sbjct 407 TAIGMMTRIAVLKWLYHLYIKTPRKMFRHTDSLFPILLQTLSDESDEVILKDLEVLAEIA 466
Query 70 IFRIKNLSDIFPAGRISIDYSPDLPTMMV 98
PAG+ SPD P + +
Sbjct 467 ---------SSPAGQTEDPGSPDGPDLRI 486
> spl:Spea_0598 alkaline phosphatase (EC:3.1.3.1)
Length=445
Score = 35.8 bits (81), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/72 (28%), Positives = 37/72 (51%), Gaps = 4/72 (6%)
Query 79 IFPAGRISIDYSPDLP-TMMVLFYDGLNKYIQSCSRYYDSLPETSPLKSQLRVMYPNLFV 137
+F + I I +P P M+++ DG+ S RYY + P+T ++ + ++ L V
Sbjct 19 LFASANIDIHEAPSRPKNMIIMIGDGMGPAYTSAYRYYQNNPDTEEIE---QTVFDRLLV 75
Query 138 GGANTTSVKDAG 149
G A+T + +G
Sbjct 76 GMASTYPARQSG 87
> apla:101798776 hydrocephalus-inducing protein homolog
Length=5452
Score = 36.2 bits (82), Expect = 2.3, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 0/58 (0%)
Query 10 TLIAMLRTISIVLYLFPLFIKPKNRFARALDSLISLDMRRLEKESKKLRTKGLLYLME 67
T I M+ I+++ +L+ L+IK + R DSL + +R L ES ++ K L L E
Sbjct 5083 TSIGMMTRIAVLKWLYHLYIKTPRKMFRHTDSLFPILLRTLSDESDEVILKDLEVLAE 5140
> ngi:103735631 Vac14; Vac14 homolog (S. cerevisiae)
Length=783
Score = 35.8 bits (81), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 9/89 (10%)
Query 10 TLIAMLRTISIVLYLFPLFIKPKNRFARALDSLISLDMRRLEKESKKLRTKGLLYLMECL 69
T I M+ I+++ +L+ L+IK + R DSL + ++ L ES ++ K L L E
Sbjct 412 TAIGMMTRIAVLKWLYHLYIKTPRKMFRHTDSLFPILLQTLSDESDEVVLKDLEVLAEIA 471
Query 70 IFRIKNLSDIFPAGRISIDYSPDLPTMMV 98
PAG+ +PD P + V
Sbjct 472 ---------SSPAGQTDDPGAPDGPDLRV 491
> mmu:234729 Vac14, AA959718, BC032215, D8Wsu151e, Tax1bp2, Trx,
ingls; Vac14 homolog (S. cerevisiae)
Length=782
Score = 35.8 bits (81), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 9/89 (10%)
Query 10 TLIAMLRTISIVLYLFPLFIKPKNRFARALDSLISLDMRRLEKESKKLRTKGLLYLMECL 69
T I M+ I+++ +L+ L+IK + R DSL + ++ L ES ++ K L L E
Sbjct 411 TTIGMMTRIAVLKWLYHLYIKTPRKMFRHTDSLFPILLQTLSDESDEVVLKDLEVLAEIA 470
Query 70 IFRIKNLSDIFPAGRISIDYSPDLPTMMV 98
PAG+ +PD P + V
Sbjct 471 ---------SSPAGQTDDPGAPDGPDLRV 490
> ldo:LDBPK_100400 folate/biopterin transporter, putative
Length=397
Score = 35.8 bits (81), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 25/41 (61%), Gaps = 0/41 (0%)
Query 13 AMLRTISIVLYLFPLFIKPKNRFARALDSLISLDMRRLEKE 53
A L+ I+ V YLF + + KNR R+ D+L L+ R E+E
Sbjct 236 AALQAITCVFYLFNWYGEKKNRVLRSEDALFILEETRKERE 276
> oas:101114132 VAC14; Vac14 homolog (S. cerevisiae)
Length=1096
Score = 35.8 bits (81), Expect = 2.7, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 47/118 (40%), Gaps = 26/118 (22%)
Query 10 TLIAMLRTISIVLYLFPLFIKPKNRFARALDSLISLDMRRLEKESKKLRTKGLLYLMECL 69
T I M+ I+++ +L+ L+IK + +R DSL + ++ L ES ++ K L L E
Sbjct 588 TAIGMMTRIAVLKWLYHLYIKTPRKMSRHTDSLFPVLLQTLSDESDEVILKDLEVLAEIA 647
Query 70 IFRIKNLSDIFP--------------------------AGRISIDYSPDLPTMMVLFY 101
D P +G S++ SP PTM FY
Sbjct 648 SSPAGQTDDPGPLDGPDLRVSHSELQAPTPSRAGLLNTSGTKSLECSPPTPTMNSYFY 705
> crb:CARUB_v10001489mg hypothetical protein
Length=317
Score = 35.4 bits (80), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 39/76 (51%), Gaps = 7/76 (9%)
Query 47 MRRLEKESKKLRTKGLLYLMECLIF----RIKNLSDIFPAGRISIDYSPDLPTM---MVL 99
++RLE ++ T+G+L ++ C IF ++ D+ + + PD+ + ++
Sbjct 191 LKRLEIAYHRVSTEGVLKILSCCIFLEFLELRGCWDVQLDNKFFKEKFPDMKVLGPRVIG 250
Query 100 FYDGLNKYIQSCSRYY 115
FYD +N + CS Y+
Sbjct 251 FYDMINDWEDCCSDYF 266
> ath:AT4G08980 FBW2; F-box with WD-40 2
Length=317
Score = 35.0 bits (79), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 18/76 (24%), Positives = 39/76 (51%), Gaps = 7/76 (9%)
Query 47 MRRLEKESKKLRTKGLLYLMECLIF----RIKNLSDIFPAGRISIDYSPDLPTM---MVL 99
++RLE ++ T+G+L ++ C +F ++ D+ + + PD+ + ++
Sbjct 191 LKRLEIAYHRVSTEGVLKILSCCVFLEFLELRGCWDVQLDNKFFKEKFPDMKVLGPRVIG 250
Query 100 FYDGLNKYIQSCSRYY 115
FYD +N + CS Y+
Sbjct 251 FYDMINDWEDCCSDYF 266
> abz:ABZJ_00003 recombination protein F
Length=360
Score = 35.0 bits (79), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 3/77 (4%)
Query 57 LRTKGLLYLMECLIFRIKNLSDIFPAGRISIDYSPDLPTMMVLFYDGLNKYIQSCSRYYD 116
L ++ L + + ++ +LS + P I ++YSP T L D LN++ + R Y
Sbjct 186 LHSQRLSIVEQWNVYFQNDLSQLLPDLEIELEYSPGFHTEQGLMQDLLNQHQKDIERRY- 244
Query 117 SLPETSPLKSQLRVMYP 133
E P ++ LR+ P
Sbjct 245 --TECGPHRADLRLKTP 259
> chx:102172568 VAC14; Vac14 homolog (S. cerevisiae)
Length=882
Score = 35.0 bits (79), Expect = 4.6, Method: Composition-based stats.
Identities = 19/58 (33%), Positives = 33/58 (57%), Gaps = 0/58 (0%)
Query 10 TLIAMLRTISIVLYLFPLFIKPKNRFARALDSLISLDMRRLEKESKKLRTKGLLYLME 67
T I M+ I+++ +L+ L+IK + +R DSL + ++ L ES ++ K L L E
Sbjct 505 TAIGMMTRIAVLKWLYHLYIKTPRKMSRHTDSLFPVLLQTLSDESDEVILKDLEVLAE 562
> abad:ABD1_00030 recF; DNA recombination and repair protein
Length=360
Score = 35.0 bits (79), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 3/77 (4%)
Query 57 LRTKGLLYLMECLIFRIKNLSDIFPAGRISIDYSPDLPTMMVLFYDGLNKYIQSCSRYYD 116
L ++ L + + ++ +LS + P I ++YSP T L D LN++ + R Y
Sbjct 186 LHSQRLSIVEQWNVYFQNDLSQLLPDLEIELEYSPGFHTEQGLMQDLLNQHQKDIERRY- 244
Query 117 SLPETSPLKSQLRVMYP 133
E P ++ LR+ P
Sbjct 245 --TEYGPHRADLRLKTP 259
> abaz:P795_0015 recombination protein F
Length=360
Score = 35.0 bits (79), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 3/77 (4%)
Query 57 LRTKGLLYLMECLIFRIKNLSDIFPAGRISIDYSPDLPTMMVLFYDGLNKYIQSCSRYYD 116
L ++ L + + ++ +LS + P I ++YSP T L D LN++ + R Y
Sbjct 186 LHSQRLSIVEQWNVYFQNDLSQLLPDLEIELEYSPGFHTEQGLMQDLLNQHQKDIERRY- 244
Query 117 SLPETSPLKSQLRVMYP 133
E P ++ LR+ P
Sbjct 245 --TEYGPHRADLRLKTP 259
> abaa:IX88_02190 DNA recombination protein RecF
Length=360
Score = 35.0 bits (79), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 3/77 (4%)
Query 57 LRTKGLLYLMECLIFRIKNLSDIFPAGRISIDYSPDLPTMMVLFYDGLNKYIQSCSRYYD 116
L ++ L + + ++ +LS + P I ++YSP T L D LN++ + R Y
Sbjct 186 LHSQRLSIVEQWNVYFQNDLSQLLPDLEIELEYSPGFHTEQGLMQDLLNQHQKDIERRY- 244
Query 117 SLPETSPLKSQLRVMYP 133
E P ++ LR+ P
Sbjct 245 --TEYGPHRADLRLKTP 259
> cge:100753800 Vac14; Vac14 homolog (S. cerevisiae)
Length=783
Score = 35.0 bits (79), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 9/89 (10%)
Query 10 TLIAMLRTISIVLYLFPLFIKPKNRFARALDSLISLDMRRLEKESKKLRTKGLLYLMECL 69
T I M+ I+++ +L+ L+IK + R DSL + ++ L ES ++ K L L E
Sbjct 412 TAIGMMTRIAVLKWLYHLYIKTPRKMFRHTDSLFPILLQTLSDESDEVVLKDLEVLAEIA 471
Query 70 IFRIKNLSDIFPAGRISIDYSPDLPTMMV 98
PAG+ +PD P V
Sbjct 472 ---------SSPAGQTDDPGTPDGPDFRV 491
> abab:BJAB0715_00014 Recombinational DNA repair ATPase (RecF
pathway)
Length=360
Score = 35.0 bits (79), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 3/77 (4%)
Query 57 LRTKGLLYLMECLIFRIKNLSDIFPAGRISIDYSPDLPTMMVLFYDGLNKYIQSCSRYYD 116
L ++ L + + ++ +LS + P I ++YSP T L D LN++ + R Y
Sbjct 186 LHSQRLSIVEQWNVYFQNDLSQLLPDLEIELEYSPGFHTEQGLMQDLLNQHQKDIERRY- 244
Query 117 SLPETSPLKSQLRVMYP 133
E P ++ LR+ P
Sbjct 245 --TEYGPHRADLRLKTP 259
> umr:103673698 protein VAC14 homolog
Length=570
Score = 35.0 bits (79), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 28/104 (27%), Positives = 43/104 (41%), Gaps = 14/104 (13%)
Query 12 IAMLRTISIVLYLFPLFIKPKNRFARALDSLISLDMRRLEKESKKLRTKGLLYLMECLIF 71
I M+ I+++ +L+ L+IK + R DSL + ++ L ES ++ K L L E
Sbjct 414 IGMMTRIAVLKWLYHLYIKTPRKMFRHTDSLFPILLQTLSDESDEVILKDLEVLAEIASS 473
Query 72 RIKNLSDIFP--------------AGRISIDYSPDLPTMMVLFY 101
D P G ++ SP PTM FY
Sbjct 474 PAGQTDDPGPLDGPDLRVSHLLNTPGTKGLECSPSTPTMNSYFY 517
> ldo:LDBPK_100410 folate/biopterin transporter, putative
Length=354
Score = 35.0 bits (79), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 25/41 (61%), Gaps = 0/41 (0%)
Query 13 AMLRTISIVLYLFPLFIKPKNRFARALDSLISLDMRRLEKE 53
A L+ I+ V YLF + + KNR R+ D+L L+ R E+E
Sbjct 236 AALQLITCVFYLFNWYGEKKNRVLRSEDALFILEETRKERE 276
> abw:BL01_15030 DNA recombination protein RecF
Length=360
Score = 35.0 bits (79), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 3/77 (4%)
Query 57 LRTKGLLYLMECLIFRIKNLSDIFPAGRISIDYSPDLPTMMVLFYDGLNKYIQSCSRYYD 116
L ++ L + + ++ +LS + P I ++YSP T L D LN++ + R Y
Sbjct 186 LHSQRLSIVEQWNVYFQNDLSQLLPDLEIELEYSPGFHTEQGLMQDLLNQHQKDIERRY- 244
Query 117 SLPETSPLKSQLRVMYP 133
E P ++ LR+ P
Sbjct 245 --TEYGPHRADLRLKTP 259
> abaj:BJAB0868_00014 Recombinational DNA repair ATPase (RecF
pathway)
Length=360
Score = 35.0 bits (79), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 3/77 (4%)
Query 57 LRTKGLLYLMECLIFRIKNLSDIFPAGRISIDYSPDLPTMMVLFYDGLNKYIQSCSRYYD 116
L ++ L + + ++ +LS + P I ++YSP T L D LN++ + R Y
Sbjct 186 LHSQRLSIVEQWNVYFQNDLSQLLPDLEIELEYSPGFHTEQGLMQDLLNQHQKDIERRY- 244
Query 117 SLPETSPLKSQLRVMYP 133
E P ++ LR+ P
Sbjct 245 --TEYGPHRADLRLKTP 259
> abj:BJAB07104_00014 Recombinational DNA repair ATPase (RecF
pathway)
Length=360
Score = 35.0 bits (79), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 3/77 (4%)
Query 57 LRTKGLLYLMECLIFRIKNLSDIFPAGRISIDYSPDLPTMMVLFYDGLNKYIQSCSRYYD 116
L ++ L + + ++ +LS + P I ++YSP T L D LN++ + R Y
Sbjct 186 LHSQRLSIVEQWNVYFQNDLSQLLPDLEIELEYSPGFHTEQGLMQDLLNQHQKDIERRY- 244
Query 117 SLPETSPLKSQLRVMYP 133
E P ++ LR+ P
Sbjct 245 --TEYGPHRADLRLKTP 259
> abd:ABTW07_0010 recF; recombination protein F
Length=360
Score = 35.0 bits (79), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 3/77 (4%)
Query 57 LRTKGLLYLMECLIFRIKNLSDIFPAGRISIDYSPDLPTMMVLFYDGLNKYIQSCSRYYD 116
L ++ L + + ++ +LS + P I ++YSP T L D LN++ + R Y
Sbjct 186 LHSQRLSIVEQWNVYFQNDLSQLLPDLEIELEYSPGFHTEQGLMQDLLNQHQKDIERRY- 244
Query 117 SLPETSPLKSQLRVMYP 133
E P ++ LR+ P
Sbjct 245 --TEYGPHRADLRLKTP 259
> abr:ABTJ_00003 recF protein
Length=360
Score = 35.0 bits (79), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 3/77 (4%)
Query 57 LRTKGLLYLMECLIFRIKNLSDIFPAGRISIDYSPDLPTMMVLFYDGLNKYIQSCSRYYD 116
L ++ L + + ++ +LS + P I ++YSP T L D LN++ + R Y
Sbjct 186 LHSQRLSIVEQWNVYFQNDLSQLLPDLEIELEYSPGFHTEQGLMQDLLNQHQKDIERRY- 244
Query 117 SLPETSPLKSQLRVMYP 133
E P ++ LR+ P
Sbjct 245 --TEYGPHRADLRLKTP 259
> abx:ABK1_0012 recF, DNA replication, recombinaison and repair
protein
Length=360
Score = 35.0 bits (79), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 3/77 (4%)
Query 57 LRTKGLLYLMECLIFRIKNLSDIFPAGRISIDYSPDLPTMMVLFYDGLNKYIQSCSRYYD 116
L ++ L + + ++ +LS + P I ++YSP T L D LN++ + R Y
Sbjct 186 LHSQRLSIVEQWNVYFQNDLSQLLPDLEIELEYSPGFHTEQGLMQDLLNQHQKDIERRY- 244
Query 117 SLPETSPLKSQLRVMYP 133
E P ++ LR+ P
Sbjct 245 --TEYGPHRADLRLKTP 259
> abb:ABBFA_000003 recF; recombination protein F
Length=360
Score = 35.0 bits (79), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 3/77 (4%)
Query 57 LRTKGLLYLMECLIFRIKNLSDIFPAGRISIDYSPDLPTMMVLFYDGLNKYIQSCSRYYD 116
L ++ L + + ++ +LS + P I ++YSP T L D LN++ + R Y
Sbjct 186 LHSQRLSIVEQWNVYFQNDLSQLLPDLEIELEYSPGFHTEQGLMQDLLNQHQKDIERRY- 244
Query 117 SLPETSPLKSQLRVMYP 133
E P ++ LR+ P
Sbjct 245 --TEYGPHRADLRLKTP 259
> abn:AB57_0018 recF; recombination protein F
Length=360
Score = 35.0 bits (79), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 3/77 (4%)
Query 57 LRTKGLLYLMECLIFRIKNLSDIFPAGRISIDYSPDLPTMMVLFYDGLNKYIQSCSRYYD 116
L ++ L + + ++ +LS + P I ++YSP T L D LN++ + R Y
Sbjct 186 LHSQRLSIVEQWNVYFQNDLSQLLPDLEIELEYSPGFHTEQGLMQDLLNQHQKDIERRY- 244
Query 117 SLPETSPLKSQLRVMYP 133
E P ++ LR+ P
Sbjct 245 --TEYGPHRADLRLKTP 259
> abc:ACICU_00003 recF; recombination protein F
Length=360
Score = 35.0 bits (79), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 3/77 (4%)
Query 57 LRTKGLLYLMECLIFRIKNLSDIFPAGRISIDYSPDLPTMMVLFYDGLNKYIQSCSRYYD 116
L ++ L + + ++ +LS + P I ++YSP T L D LN++ + R Y
Sbjct 186 LHSQRLSIVEQWNVYFQNDLSQLLPDLEIELEYSPGFHTEQGLMQDLLNQHQKDIERRY- 244
Query 117 SLPETSPLKSQLRVMYP 133
E P ++ LR+ P
Sbjct 245 --TEYGPHRADLRLKTP 259
> aby:ABAYE0003 recF; recombination protein F
Length=360
Score = 35.0 bits (79), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 3/77 (4%)
Query 57 LRTKGLLYLMECLIFRIKNLSDIFPAGRISIDYSPDLPTMMVLFYDGLNKYIQSCSRYYD 116
L ++ L + + ++ +LS + P I ++YSP T L D LN++ + R Y
Sbjct 186 LHSQRLSIVEQWNVYFQNDLSQLLPDLEIELEYSPGFHTEQGLMQDLLNQHQKDIERRY- 244
Query 117 SLPETSPLKSQLRVMYP 133
E P ++ LR+ P
Sbjct 245 --TEYGPHRADLRLKTP 259
> acb:A1S_0003 recF; recombination protein F
Length=280
Score = 34.7 bits (78), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 3/77 (4%)
Query 57 LRTKGLLYLMECLIFRIKNLSDIFPAGRISIDYSPDLPTMMVLFYDGLNKYIQSCSRYYD 116
L ++ L + + ++ +LS + P I ++YSP T L D LN++ + R Y
Sbjct 106 LHSQRLSIVEQWNVYFQNDLSQLLPDLEIELEYSPGFHTEQGLMQDLLNQHQKDIERRY- 164
Query 117 SLPETSPLKSQLRVMYP 133
E P ++ LR+ P
Sbjct 165 --TEYGPHRADLRLKTP 179
> eus:EUTSA_v10019874mg hypothetical protein
Length=2058
Score = 35.0 bits (79), Expect = 5.4, Method: Composition-based stats.
Identities = 29/92 (32%), Positives = 43/92 (47%), Gaps = 7/92 (8%)
Query 43 ISLDMRRLEKESKKLRTKGLLYLMECLIFRIKNLSDIFPAGRISIDYSPDLPTMMVLFYD 102
I L++R + +L T G L ECLI K+L R SID +P+L T L
Sbjct 634 IMLNLREEKVGEMELSTSGSLMTKECLIEENKSLKGEIKLLRASIDKNPEL-TRSALENT 692
Query 103 GLNKYIQSCSRYYDS------LPETSPLKSQL 128
L + +Q ++Y+ L E + L+ QL
Sbjct 693 KLREQLQRYQKFYERGEREALLAEVTGLRDQL 724
> abau:IX87_14435 DNA recombination protein RecF
Length=360
Score = 34.7 bits (78), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 3/77 (4%)
Query 57 LRTKGLLYLMECLIFRIKNLSDIFPAGRISIDYSPDLPTMMVLFYDGLNKYIQSCSRYYD 116
L ++ L + + ++ +LS + P I ++YSP T L D LN++ + R Y
Sbjct 186 LHSQRLSIVEQWNVYFQNDLSQLLPDLEIELEYSPGFHTEQGLMQDLLNQHQKDIERRY- 244
Query 117 SLPETSPLKSQLRVMYP 133
E P ++ LR+ P
Sbjct 245 --TEYGPHRADLRLKTP 259
> abk:LX00_00065 DNA recombination protein RecF
Length=360
Score = 34.7 bits (78), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 3/77 (4%)
Query 57 LRTKGLLYLMECLIFRIKNLSDIFPAGRISIDYSPDLPTMMVLFYDGLNKYIQSCSRYYD 116
L ++ L + + ++ +LS + P I ++YSP T L D LN++ + R Y
Sbjct 186 LHSQRLSIVEQWNVYFQNDLSQLLPDLEIELEYSPGFHTEQGLMQDLLNQHQKDIERRY- 244
Query 117 SLPETSPLKSQLRVMYP 133
E P ++ LR+ P
Sbjct 245 --TEYGPHRADLRLKTP 259
> ldo:LDBPK_100390 folate/biopterin transporter, putative
Length=305
Score = 34.7 bits (78), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 25/41 (61%), Gaps = 0/41 (0%)
Query 13 AMLRTISIVLYLFPLFIKPKNRFARALDSLISLDMRRLEKE 53
A L+ I+ V YLF + + KNR R+ D+L L+ R E+E
Sbjct 236 AALQLITCVFYLFNWYGEKKNRVLRSEDALFILEETRKERE 276
> abh:M3Q_236 recombination protein F
Length=350
Score = 34.7 bits (78), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 3/77 (4%)
Query 57 LRTKGLLYLMECLIFRIKNLSDIFPAGRISIDYSPDLPTMMVLFYDGLNKYIQSCSRYYD 116
L ++ L + + ++ +LS + P I ++YSP T L D LN++ + R Y
Sbjct 176 LHSQRLSIVEQWNVYFQNDLSQLLPDLEIELEYSPGFHTEQGLMQDLLNQHQKDIERRY- 234
Query 117 SLPETSPLKSQLRVMYP 133
E P ++ LR+ P
Sbjct 235 --TEYGPHRADLRLKTP 249
> bpk:BBK_4643 benB; benzoate 1,2-dioxygenase, small subunit (EC:1.14.12.10)
Length=163
Score = 33.9 bits (76), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 22/82 (27%), Positives = 37/82 (45%), Gaps = 0/82 (0%)
Query 29 IKPKNRFARALDSLISLDMRRLEKESKKLRTKGLLYLMECLIFRIKNLSDIFPAGRISID 88
IK + A D+ S ++ +E+ES + + L +R K +S F R +ID
Sbjct 75 IKTERSSATVPDTRTSHNIANVERESADGDVHTVRFNWHTLSYRYKTVSSYFGMSRYAID 134
Query 89 YSPDLPTMMVLFYDGLNKYIQS 110
+S D P ++ + N YI
Sbjct 135 FSGDAPKIVSKYVVLKNDYINQ 156
> bpq:BPC006_II2545 benzoate 1,2 dioxygenase, beta subunit
Length=163
Score = 33.9 bits (76), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 22/82 (27%), Positives = 37/82 (45%), Gaps = 0/82 (0%)
Query 29 IKPKNRFARALDSLISLDMRRLEKESKKLRTKGLLYLMECLIFRIKNLSDIFPAGRISID 88
IK + A D+ S ++ +E+ES + + L +R K +S F R +ID
Sbjct 75 IKTERSSATVPDTRTSHNIANVERESADGDVHTVRFNWHTLSYRYKTVSSYFGMSRYAID 134
Query 89 YSPDLPTMMVLFYDGLNKYIQS 110
+S D P ++ + N YI
Sbjct 135 FSGDAPKIVSKYVVLKNDYINQ 156
> bpz:BP1026B_II2042 benB; benzoate 1,2-dioxygenase subunit beta
Length=163
Score = 33.9 bits (76), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 22/82 (27%), Positives = 37/82 (45%), Gaps = 0/82 (0%)
Query 29 IKPKNRFARALDSLISLDMRRLEKESKKLRTKGLLYLMECLIFRIKNLSDIFPAGRISID 88
IK + A D+ S ++ +E+ES + + L +R K +S F R +ID
Sbjct 75 IKTERSSATVPDTRTSHNIANVERESADGDVHTVRFNWHTLSYRYKTVSSYFGMSRYAID 134
Query 89 YSPDLPTMMVLFYDGLNKYIQS 110
+S D P ++ + N YI
Sbjct 135 FSGDAPKIVSKYVVLKNDYINQ 156
> bpsd:BBX_4475 benB; benzoate 1,2-dioxygenase, small subunit
(EC:1.14.12.10)
Length=163
Score = 33.9 bits (76), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 22/82 (27%), Positives = 37/82 (45%), Gaps = 0/82 (0%)
Query 29 IKPKNRFARALDSLISLDMRRLEKESKKLRTKGLLYLMECLIFRIKNLSDIFPAGRISID 88
IK + A D+ S ++ +E+ES + + L +R K +S F R +ID
Sbjct 75 IKTERSSATVPDTRTSHNIANVERESADGDVHTVRFNWHTLSYRYKTVSSYFGMSRYAID 134
Query 89 YSPDLPTMMVLFYDGLNKYIQS 110
+S D P ++ + N YI
Sbjct 135 FSGDAPKIVSKYVVLKNDYINQ 156
> bpse:BDL_5310 benB; benzoate 1,2-dioxygenase, small subunit
(EC:1.14.12.10)
Length=163
Score = 33.9 bits (76), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 22/82 (27%), Positives = 37/82 (45%), Gaps = 0/82 (0%)
Query 29 IKPKNRFARALDSLISLDMRRLEKESKKLRTKGLLYLMECLIFRIKNLSDIFPAGRISID 88
IK + A D+ S ++ +E+ES + + L +R K +S F R +ID
Sbjct 75 IKTERSSATVPDTRTSHNIANVERESADGDVHTVRFNWHTLSYRYKTVSSYFGMSRYAID 134
Query 89 YSPDLPTMMVLFYDGLNKYIQS 110
+S D P ++ + N YI
Sbjct 135 FSGDAPKIVSKYVVLKNDYINQ 156
> bpl:BURPS1106A_A2582 benB; benzoate 1,2 dioxygenase subunit
beta (EC:1.14.12.10)
Length=163
Score = 33.9 bits (76), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 22/82 (27%), Positives = 37/82 (45%), Gaps = 0/82 (0%)
Query 29 IKPKNRFARALDSLISLDMRRLEKESKKLRTKGLLYLMECLIFRIKNLSDIFPAGRISID 88
IK + A D+ S ++ +E+ES + + L +R K +S F R +ID
Sbjct 75 IKTERSSATVPDTRTSHNIANVERESADGDVHTVRFNWHTLSYRYKTVSSYFGMSRYAID 134
Query 89 YSPDLPTMMVLFYDGLNKYIQS 110
+S D P ++ + N YI
Sbjct 135 FSGDAPKIVSKYVVLKNDYINQ 156
> bps:BPSS1904 benB; benzoate 1,2-dioxygenase subunit beta (EC:1.14.12.10)
Length=163
Score = 33.9 bits (76), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 22/82 (27%), Positives = 37/82 (45%), Gaps = 0/82 (0%)
Query 29 IKPKNRFARALDSLISLDMRRLEKESKKLRTKGLLYLMECLIFRIKNLSDIFPAGRISID 88
IK + A D+ S ++ +E+ES + + L +R K +S F R +ID
Sbjct 75 IKTERSSATVPDTRTSHNIANVERESADGDVHTVRFNWHTLSYRYKTVSSYFGMSRYAID 134
Query 89 YSPDLPTMMVLFYDGLNKYIQS 110
+S D P ++ + N YI
Sbjct 135 FSGDAPKIVSKYVVLKNDYINQ 156
> bmal:DM55_3532 benB; benzoate 1,2-dioxygenase, small subunit
(EC:1.14.12.10)
Length=163
Score = 33.9 bits (76), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 22/82 (27%), Positives = 37/82 (45%), Gaps = 0/82 (0%)
Query 29 IKPKNRFARALDSLISLDMRRLEKESKKLRTKGLLYLMECLIFRIKNLSDIFPAGRISID 88
IK + A D+ S ++ +E+ES + + L +R K +S F R +ID
Sbjct 75 IKTERSSATVPDTRTSHNIANVERESADGDVHTVRFNWHTLSYRYKTVSSYFGMSRYAID 134
Query 89 YSPDLPTMMVLFYDGLNKYIQS 110
+S D P ++ + N YI
Sbjct 135 FSGDAPKIVSKYVVLKNDYINQ 156
> bmn:BMA10247_A0214 benB; benzoate 1,2-dioxygenase beta subunit
(EC:1.14.12.10)
Length=163
Score = 33.9 bits (76), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 22/82 (27%), Positives = 37/82 (45%), Gaps = 0/82 (0%)
Query 29 IKPKNRFARALDSLISLDMRRLEKESKKLRTKGLLYLMECLIFRIKNLSDIFPAGRISID 88
IK + A D+ S ++ +E+ES + + L +R K +S F R +ID
Sbjct 75 IKTERSSATVPDTRTSHNIANVERESADGDVHTVRFNWHTLSYRYKTVSSYFGMSRYAID 134
Query 89 YSPDLPTMMVLFYDGLNKYIQS 110
+S D P ++ + N YI
Sbjct 135 FSGDAPKIVSKYVVLKNDYINQ 156
> bml:BMA10229_1555 benB; benzoate 1,2-dioxygenase subunit beta
Length=163
Score = 33.9 bits (76), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 22/82 (27%), Positives = 37/82 (45%), Gaps = 0/82 (0%)
Query 29 IKPKNRFARALDSLISLDMRRLEKESKKLRTKGLLYLMECLIFRIKNLSDIFPAGRISID 88
IK + A D+ S ++ +E+ES + + L +R K +S F R +ID
Sbjct 75 IKTERSSATVPDTRTSHNIANVERESADGDVHTVRFNWHTLSYRYKTVSSYFGMSRYAID 134
Query 89 YSPDLPTMMVLFYDGLNKYIQS 110
+S D P ++ + N YI
Sbjct 135 FSGDAPKIVSKYVVLKNDYINQ 156
Lambda K H a alpha
0.325 0.141 0.405 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 126460789848