bitscore colors: <40, 40-50 , 50-80, 80-200, >200

           BLASTP 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: all_orgs
           14,240,465 sequences; 5,121,972,263 total letters





Query= Contig-28_CDS_annotation_glimmer3.pl_2_2

Length=324
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  fve:101297601  minor spike protein H-like                           56.6    3e-07


> fve:101297601  minor spike protein H-like
Length=139

 Score = 56.6 bits (135),  Expect = 3e-07, Method: Compositional matrix adjust.
 Identities = 24/49 (49%), Positives = 39/49 (80%), Gaps = 0/49 (0%)

Query  68   AEAAKNRDWQKMMSDTAHQREIRDLQAAGLNPILSATGGNGAAVTSGAT  116
            AEA +NR++Q+ +S++A+QR++ DL +AGLNP+L+   G GA+  SG+T
Sbjct  24   AEAQRNREFQERLSNSAYQRQVADLSSAGLNPMLAYIKGGGASTPSGST  72



Lambda      K        H        a         alpha
   0.308    0.116    0.308    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 581371311180